Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 135 / 2e-33 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 110 / 3e-25 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 106 / 6e-24 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12290 95 / 4e-20 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G10780 88 / 5e-18 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G47250 85 / 6e-17 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 84 / 7e-17 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 84 / 1e-16 RFL1 RPS5-like 1 (.1) AT5G63020 80 / 2e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G47260 76 / 3e-14 ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014356 [exp] 845 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 830 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014340 [exp] 811 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 795 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 788 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 787 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014336 [exp] 786 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014360 [exp] 758 / 0 AT4G27220 173 / 3e-46 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014346 [exp] 749 / 0 AT4G27220 317 / 1e-92 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 54 / 3e-07 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 46 / 8e-05 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G014334.1 pacid=42774179 polypeptide=Potri.019G014334.1.p locus=Potri.019G014334 ID=Potri.019G014334.1.v4.1 annot-version=v4.1 ATGAGGAGCAGGGGAGATGCATTTGACGAGGGCCACACGATGCTTAATAGACTTGAATATGTCTGCTTATTGGAAGGTGCTAAAATGGAGTCTGATGATA GTAGATGTGTCAAGATGCATGACTTGATTAGAGATATGGCCATCCAAATACTGCTAGAGAACTCTCAAGGCATGGTTAAAGCAGGTGCACAATTAAAAGA GTTGCCAGATGCAGAGGAGTGGACAGAGAATCTCACTAGAGTCTCACTAATGCGAAACTACATTAAAGAAATTCCTTCCAGCTATTCACCTAGGTGTCCC TATCTATCAACTCTATTGCTATGTCAAAATCGTTGGTTGCGATTCATTGCAGATTCATTTTTCAAGCAATTGCATGGGCTCAAGGTCCTCGATCTGTCCT GGACAGATATTGAAAAATTGCCAGACTCTGTCTCTGATTTGGCGAGTCTCACTGCGTTATTGCTCAATGATTGTGAGAGTTTAAGACATGTTTCATCATT AAAGAAGCTCAAGGCACTGAAGAGGTTGGATCTCTCTAGGACTGGGGCACTTGAAAAGATGCCGCAAGGAATGGAATGCCTAACCAACCTGAGGTATCTT AGAATGAATGGATGTGGTGAAAAGGAGTTTCCTAGTGGGATATTACCAAAACTCTCTCACCTGCAAGTCTTTGTACTAGAAGAGTTTATGCCGCAAGATG ATGCTCCTATAACAGTTAAAGGAAAGGAAGTAGGATCCTTGAGAAATTTGGAAACTTTGGAATGCCATTTCGAAGGTTTTTCTGACTTCGTGGAGTATGT CAGATCTGGGGATGGGATCTTATCATTAAGCACATACAAAATTTTAGTAGGAGAGGTGGGTAGATATTCAGAGCAATTGATTGAAGATTTTCCAAGTAAA ACAGTTGGGTTGGGTAATTTGAGTATCAACGGAGATAGAGATTTTCAGGTCAAGTTCTTAAATGGCATTCAAGGACTGATTTGTGAAAGCATCGATGCAA GAAGTTTATGTGATGTTTTGTCATTAGAGAATGCAACTGAACTGGAGCGCATCAGCATTCGGGAATGCCATAACATGGAGAGCTTGGTTTCATCTTCTTG GTTCTGCTCTGCTCCACCACCATTGCCATGTAACGGTACGTTTTCTGGTCTTAAAGAGTTTTTTTGTTATAGATGTAAAAGTATGAAGAAGCTGTTCCCG CTTGTGTTGCTGCCAAACCTCGTAAACCTGGAAAGGATTGAAGTTAATGATTGTGAGAAAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCAGCA CCTCTAATTCTATCACAGAATTCATTCTCCCAAAGTTAAGAACTCTGAGATTGGTTATTTTACCAGAACTGAAAAGCATTTGCAGTGCAAAAGTGATTTG CAATTCTCTTGAAGATATTAGTGTAATGTATTGTGAGAAGCTGAAGAGGATGCCAATTTGTCTTCCGTTGCGTGAAAATGGCCAGCCATCTCCTTTTCTA AACATCCAAGCATGTCCAAAAGAATGGTGGGAGACAGTAGTGGAGTGGGAGCATCCTAATGCAAAGGATGTCCTTCATCCCTTTGTAAACTACTGA
AA sequence Show only first row Show all	>Potri.019G014334.1 pacid=42774179 polypeptide=Potri.019G014334.1.p locus=Potri.019G014334 ID=Potri.019G014334.1.v4.1 annot-version=v4.1 MRSRGDAFDEGHTMLNRLEYVCLLEGAKMESDDSRCVKMHDLIRDMAIQILLENSQGMVKAGAQLKELPDAEEWTENLTRVSLMRNYIKEIPSSYSPRCP YLSTLLLCQNRWLRFIADSFFKQLHGLKVLDLSWTDIEKLPDSVSDLASLTALLLNDCESLRHVSSLKKLKALKRLDLSRTGALEKMPQGMECLTNLRYL RMNGCGEKEFPSGILPKLSHLQVFVLEEFMPQDDAPITVKGKEVGSLRNLETLECHFEGFSDFVEYVRSGDGILSLSTYKILVGEVGRYSEQLIEDFPSK TVGLGNLSINGDRDFQVKFLNGIQGLICESIDARSLCDVLSLENATELERISIRECHNMESLVSSSWFCSAPPPLPCNGTFSGLKEFFCYRCKSMKKLFP LVLLPNLVNLERIEVNDCEKMEEIIGTTDEESSTSNSITEFILPKLRTLRLVILPELKSICSAKVICNSLEDISVMYCEKLKRMPICLPLRENGQPSPFL NIQACPKEWWETVVEWEHPNAKDVLHPFVNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014364 [exp]	1.00	0.9235
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Potri.009G168600 [exp]	2.00	0.8904	CDPK3.2
AT4G30780			unknown protein		Potri.006G180500 [exp]	2.82	0.8631
AT5G17680			disease resistance protein (TI...		Potri.019G068200 [exp]	4.00	0.8447
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	5.74	0.8778
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	7.54	0.8357
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	9.16	0.8061
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	9.16	0.8640
AT5G17680			disease resistance protein (TI...		Potri.017G103701 [exp]	9.79	0.8553
AT4G11170			Disease resistance protein (TI...		Potri.019G095932 [exp]	10.48	0.8606

Compare expression of checked genes

Potri.019G014334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.