Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61190 70 / 4e-12 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61310 68 / 1e-11 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61300 67 / 2e-11 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61180 66 / 5e-11 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT4G10780 62 / 8e-10 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 62 / 1e-09 RFL1 RPS5-like 1 (.1) AT1G52660 60 / 2e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G12220 59 / 7e-09 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G63020 59 / 8e-09 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12290 59 / 8e-09 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014336 [exp] 769 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014332 [exp] 727 / 0 AT4G10780 129 / 1e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014356 [exp] 709 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014324 [exp] 704 / 0 AT4G27220 271 / 1e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 529 / 3e-172 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014354 [exp] 426 / 1e-146 ND / Potri.019G014340 [exp] 428 / 4e-135 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014322 [exp] 393 / 2e-122 AT4G27220 319 / 3e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 296 / 1e-86 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026109 [exp] 45 / 0.0003 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 44 / 0.0005 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 43 / 0.0008 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G014358.1 pacid=42774495 polypeptide=Potri.019G014358.1.p locus=Potri.019G014358 ID=Potri.019G014358.1.v4.1 annot-version=v4.1 ATGGAAGGGTTCCAACCATCTTTTATGGAGGAGGTTGACAACATGACATGGGATCAGCTGGGTTTTCAATCAGAAGAAGATACATTCAATATGTCTGAGC TTCTCTCGCCGCCACCGGAGGTTCCAGTCAACCAAAGCTCCATATCATGCAATGATCAAGGTGGACAGAACAATTTGATCAACGATAGTATTCAACAAAC AACTCAGTTTCCAACTTCATTTCCTGAAACAATGATGGAAGGGTTCCCACCATCTTCTATGGATGATCTTGAATCACTATTTCTCTCGCCGGCACCGGAG GTTCCAGTCAACCAAGGCTCCATATTATGCAATGATCAAGGTGGACATAAGAATGTGATCAACGATAGTATTCAACAAACAACTCAGTTTCCAACTTCAT TTCCTGAAACCATGACGGGACATGGCTATATGACACCGAATGCAACCACATCACAACATGGTGAATTCAATCAACCTGGACCTTCTTCTCTTGCTCCCTG GTATCAGCCTAATCCTAATTTATTTGATCCTCAATGTGCCAATCCTTTGAGGGACCAACAATTGACTAATTATCAGTTACCAATGAGCAATCAAGTGCCT GCGATGCTACCTGGACCTCATCCTCCAATGAATCAATGGATTCAACATTTTCCTAATCAAGGACAAGTCGATCAAGCTTTTGCAATTCCTAATATAGACA ATATGCAACAGGAGAACTTCGTGCCTCAAAACTTTGACAACTCTACTAGGTCACAGATGGATAACCTCCGAGTCCGAGGATTGCAAAATCAAACAGCTAG GCCAAATGCCTCAAATCCTGGCCTTGGCACTTCCCTGCAAAGTCAAAATAGGGGTTTAAATACTCAACAAGTCGAAATGGTTGGATCAAATGATCCGTTT TGGAATTATGTTGAAGATGGGGCTGATGATGGTAGCATGAAGTGTATGTTTTGTCCACATACATATGCCATTAAAACTTCCATTTCAAGGATCAAATGGC ATTTATCAGGAGAGAGAGGGAACGGTGTTGCCATTTGTCGTGGGGTGACTAAAGAAGTTCAAGAAGCAGCCTTTCAAGCTATGTGTGGTGGCAACAAAAG ACATAAAAACACAGCAAGTTCAATCAATGTTAATGATTGTGGAATTTCAACAATGGTAGGAGGTATTGGAAGGGTACAAAGAGAAGTTCAGGTTGTAGAA CCCGGAGTAGGGGAAGAGAGGATTACTTCACATGCAATAGCAGGAAACGACGTAGTAAGCATGACCGGAATGAGAGCACCAGAAGATGGAGTTTCCGAAG GGGCACTCGAGAGCAGACTGAGGACAGAACCAGCGGATCGAGCGTTGGAACAAAGCAATGCAGTACTTGGCAATTTGGCAGGAGTTCAGGGGGTGCTGGA ACAAGGTGCCGGGGAAGAGAGAATTAATCGGGTTAGACAGAGGACAGAACCAGTGGAGGAGGATGTGGAGAATAGTCAAAGATCAGTGCAGTTTGGTGCT GGAGCTAGATCTTCTGAAAGTCTGAAATACAACAAGACTAGAGGAGTTCCATTACCTACTAGCTCTACAAAGCCAGTGGGTCAAGCATTCGAAGAGAATA CGAAGGTGATATGGTCTTTGTTAATGGATGGGGATGTCTCAATCATTGGCATTTATGGGATGGGAGGAGTTGGTAAATCCAGAATACTGCAACATATCCA TAATGAGCTTCTACAACAACCAGATATTTGTGATCATGTTTGGTGGGTGACTGTATCTCAAGATTTCAGCATTAACCGACTGCAGAATCTTATTGCTGAA CATTTTGATCTAGATCTTTCAAGAAAAAATGATGAACTGCATAGAGCTGCCGAATTGTCAGAAAAATTAAAAAAAAAACAAAAATAG
AA sequence Show only first row Show all	>Potri.019G014358.1 pacid=42774495 polypeptide=Potri.019G014358.1.p locus=Potri.019G014358 ID=Potri.019G014358.1.v4.1 annot-version=v4.1 MEGFQPSFMEEVDNMTWDQLGFQSEEDTFNMSELLSPPPEVPVNQSSISCNDQGGQNNLINDSIQQTTQFPTSFPETMMEGFPPSSMDDLESLFLSPAPE VPVNQGSILCNDQGGHKNVINDSIQQTTQFPTSFPETMTGHGYMTPNATTSQHGEFNQPGPSSLAPWYQPNPNLFDPQCANPLRDQQLTNYQLPMSNQVP AMLPGPHPPMNQWIQHFPNQGQVDQAFAIPNIDNMQQENFVPQNFDNSTRSQMDNLRVRGLQNQTARPNASNPGLGTSLQSQNRGLNTQQVEMVGSNDPF WNYVEDGADDGSMKCMFCPHTYAIKTSISRIKWHLSGERGNGVAICRGVTKEVQEAAFQAMCGGNKRHKNTASSINVNDCGISTMVGGIGRVQREVQVVE PGVGEERITSHAIAGNDVVSMTGMRAPEDGVSEGALESRLRTEPADRALEQSNAVLGNLAGVQGVLEQGAGEERINRVRQRTEPVEEDVENSQRSVQFGA GARSSESLKYNKTRGVPLPTSSTKPVGQAFEENTKVIWSLLMDGDVSIIGIYGMGGVGKSRILQHIHNELLQQPDICDHVWWVTVSQDFSINRLQNLIAE HFDLDLSRKNDELHRAAELSEKLKKKQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.005G135100 [exp]	1.41	0.8830
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	2.44	0.8949
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014322 [exp]	2.82	0.8653
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014336 [exp]	3.46	0.8718
AT1G19270		DA1	DA1 (.1)		Potri.014G039900 [exp]	4.00	0.8448
					Potri.019G014314 [exp]	5.00	0.8614
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.008G048400 [exp]	7.74	0.8041
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	8.36	0.8405
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	9.94	0.8389
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014372 [exp]	10.95	0.8296

Compare expression of checked genes

Potri.019G014358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.