Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 174 / 1e-46 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 114 / 1e-26 NB-ARC domain-containing disease resistance protein (.1) AT1G12280 99 / 2e-21 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 97 / 6e-21 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT4G10780 92 / 2e-19 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G05400 91 / 5e-19 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12290 89 / 1e-18 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G63020 88 / 4e-18 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61310 88 / 5e-18 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 87 / 7e-18 RFL1 RPS5-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014336 [exp] 892 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 866 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 802 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014356 [exp] 785 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014340 [exp] 781 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014308 [exp] 763 / 0 AT4G27220 326 / 1e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 758 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 754 / 0 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 754 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 66 / 7e-11 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10001375 [exp] 62 / 7e-10 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007261 [exp] 58 / 1e-08 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 50 / 4e-06 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10017418 [exp] 50 / 6e-06 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10024150 [exp] 49 / 8e-06 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10039850 [exp] 49 / 1e-05 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035976 [exp] 49 / 1e-05 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10035674 [exp] 48 / 2e-05 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007455 [exp] 47 / 3e-05 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014360.1 pacid=42773103 polypeptide=Potri.019G014360.1.p locus=Potri.019G014360 ID=Potri.019G014360.1.v4.1 annot-version=v4.1 ATGCTTAATAAACTTGAAAATGTCTGTCTATTGGAAAGTGCTAAAATGGATTATGATGGTAGTAGATGTTTCAAGATGCATGACTTGATTAGGGACATGG CCATCCAAATACTGCTAGAGAACTCTCAAGGCATGGTCAAAGCAGGTGCACAATTAAAAGAGTTGCCAGATGCAGAGGAATGGATGGAGAATCTGACGAG AGTTTCATTAATGCAAAACGAGATCGAAGAAATTCCTTCCAGCTATTCACCAAGGTGTCCCTATCTATCAACTCTATTTCTACGTGATAATGACCGGTTG AGATTTGTTGCGGATTCATTTTTCAAGCAATTGCATGGGCTCAAGGTCCTCGATCTGTCTTACAAAGGTATTGAAAATTTGCCAGACTCTGTCTCTGATT TGGTGAGTCTCACTGCATTATTGCTCAAAGAGTGTGAGAACTTACGTCATGTTCCATCATTAGAGAAGCTCAGGGCACTGAAGAGGTTGGATCTCTATTG GACTCCGCTTAAAAAGATGCCGCAAGGAATGGAATGCCTAACCAACCTGAGGTATCTTAGAATGAATGGATGTGGTGAAAAGGAGTTTCCCAGTGGGATA TTACCAAAACTCTCTCACCTGCAAGTCTTTGTACTAGAAGAGTTAATGGGGGAATGTTGTGCTTATGCTCCGATAACAGTTAAAGGAAAGGAAGTAGGAT CCTTGAGAAATTTGGAAAGTTTGGAATGCCATTTCGAAGGTTTCTCTGACTTCGTGGAGTATCTCAGATCTCGGGATGGGATCCAATCATTAAGCACATA TACAATTATAGTAGGAATGGTGGATACAGATAAGTGGATTGGCACTTGTGCTTTTCCAAGTAAAACAGTTGGGTTGGGTAATTTGAGTATCAACGGAGAT GGAGATTTTCAGGTCAAGTACTTAAATGGCATTCAAGGACTGGTTTGTGAATGCATCGACGCAAGAAGTTTATGTGATGTTTTGTCATTAGAGAATGCAA CTGAACTTGAGCTCATCAGAATTGAGGATTGCAATAACATGGAGAGCTTGGTTTCATCTTCTTGGTTCTGCTCTGCTCCACCACCATTGCCATCATATAA TGGTATGTTTTCTAGTCTTAAAATGTTTTATTGTTATGGATGTGAAAGTATGAAGAAGCTGTTCCCGCTTGTGCTGCTACCAAACTTCGTTAACCTGGAA AGGATTGTTGTTGAGGATTGTAAGAAAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCAGCACCTCCAATTCCATCACGGAAGTCATTCTCCCAA AGTTAAGAACTCTGAGATTGTTTGAATTACCAGAACTGAAAAGCATTTGCAGTGCAAAACTGATTTGCAATTCTCTTGAAGATATTGATGTAGAGGATTG TCAGAAGCTGAAGAGGATGCCAATTTGTCTTCCGTTGCTTGAAAATGACCAGCCATCTCCTCCCCCTTCTCTTAAAGAAATCACGGTATATCCAGAAGAA TGGTGGGAGACAGTAGTGGAGTGGGAGCATCCTAATGCAAAGGATGTCCTTCGTCGCTGTGTAAGGTTTTGGTAG
AA sequence Show only first row Show all	>Potri.019G014360.1 pacid=42773103 polypeptide=Potri.019G014360.1.p locus=Potri.019G014360 ID=Potri.019G014360.1.v4.1 annot-version=v4.1 MLNKLENVCLLESAKMDYDGSRCFKMHDLIRDMAIQILLENSQGMVKAGAQLKELPDAEEWMENLTRVSLMQNEIEEIPSSYSPRCPYLSTLFLRDNDRL RFVADSFFKQLHGLKVLDLSYKGIENLPDSVSDLVSLTALLLKECENLRHVPSLEKLRALKRLDLYWTPLKKMPQGMECLTNLRYLRMNGCGEKEFPSGI LPKLSHLQVFVLEELMGECCAYAPITVKGKEVGSLRNLESLECHFEGFSDFVEYLRSRDGIQSLSTYTIIVGMVDTDKWIGTCAFPSKTVGLGNLSINGD GDFQVKYLNGIQGLVCECIDARSLCDVLSLENATELELIRIEDCNNMESLVSSSWFCSAPPPLPSYNGMFSSLKMFYCYGCESMKKLFPLVLLPNFVNLE RIVVEDCKKMEEIIGTTDEESSTSNSITEVILPKLRTLRLFELPELKSICSAKLICNSLEDIDVEDCQKLKRMPICLPLLENDQPSPPPSLKEITVYPEE WWETVVEWEHPNAKDVLRRCVRFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014360 [exp]	0	1
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	8.54	0.7722
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.002G133632 [exp]	10.95	0.7212
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.006G034500 [exp]	13.78	0.7309
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.016G059300 [exp]	20.59	0.7131
AT5G47610			RING/U-box superfamily protein...		Potri.001G453800 [exp]	28.86	0.6964
AT4G33920			Protein phosphatase 2C family ...		Potri.009G091600 [exp]	31.11	0.6894
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	44.27	0.7148
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.015G104000 [exp]	78.23	0.6592
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Potri.014G067300 [exp]	83.89	0.6206	MAP1.3
AT2G01620		MEE11	maternal effect embryo arrest ...		Potri.008G133100 [exp]	85.97	0.6723

Compare expression of checked genes

Potri.019G014360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.