Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014340 [exp] 336 / 4e-107 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 332 / 3e-105 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 328 / 2e-103 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014322 [exp] 322 / 2e-102 AT4G27220 319 / 3e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 315 / 2e-100 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014356 [exp] 292 / 3e-91 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014332 [exp] 268 / 2e-85 AT4G10780 129 / 1e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014358 [exp] 253 / 8e-81 AT1G61190 65 / 1e-10 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014336 [exp] 219 / 1e-65 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000517 [exp] 39 / 0.001 AT4G15020 122 / 8e-33 hAT transposon superfamily (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger
Representative CDS sequence Show only first row Show all	>Potri.019G014362.1 pacid=42773453 polypeptide=Potri.019G014362.1.p locus=Potri.019G014362 ID=Potri.019G014362.1.v4.1 annot-version=v4.1 ATGGTTAGATCAAAGGATCCATTTTGGAATTATATTGAAGATAGGACTGATGGTAGCATGAAGTGTAAGTTTTGTCCACATACATTTGCCAATAAAACCT CCATTTCAAGGATCAAATGGCATTTATCAGGAGAGGAAGGGCATAATGTTGCCATTTGTCATGGGGTGCCTAAAGAAGTTCAAGAAGCAGCCTGGAAAGC TATGTGTGGTGGCAACAAAAGACATAAAATCACAGCAGGTTCGATCAATGTTAATGATTGTGGAATTTCAACAATGGTAGGAGGAATTGGAAGGGTACAA AGAGAAGTTCAGGTTGTAGAACCCGGAGTAGTGGAAGAGAGGATTTCTTCACATGCAATAGCAGGAAACGACGTAGTAAGCATGACCGGAATGAGAGCAC AAGAAGATGGAGTTTCCGAAGGGGCACTCGAGAGCAGACTGAGGACAGAACCAGTGGATCGATCGTTGGAACAAAGCAATGCAGTACTTGGCAATATGGC AGGGGGAGCTAGAAGGATACAAGTGGGAGTTCAGGGCATGGAACAAGATCCAGGAGAAGAGAGAATTCAGTCGCATCTACAAGCGGAAAATGGCATGGAA AACACTGGTGAAGGATCTTTTCAGCATGATGCATTTGAGACTGTACCAAGAACAGAGAAAGTGCAGACTCTGGAGCCTCGATGA
AA sequence Show only first row Show all	>Potri.019G014362.1 pacid=42773453 polypeptide=Potri.019G014362.1.p locus=Potri.019G014362 ID=Potri.019G014362.1.v4.1 annot-version=v4.1 MVRSKDPFWNYIEDRTDGSMKCKFCPHTFANKTSISRIKWHLSGEEGHNVAICHGVPKEVQEAAWKAMCGGNKRHKITAGSINVNDCGISTMVGGIGRVQ REVQVVEPGVVEERISSHAIAGNDVVSMTGMRAQEDGVSEGALESRLRTEPVDRSLEQSNAVLGNMAGGARRIQVGVQGMEQDPGEERIQSHLQAENGME NTGEGSFQHDAFETVPRTEKVQTLEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.019G014362 [exp]	0	1
					Potri.019G002628 [exp]	15.49	0.6804
					Potri.005G240500 [exp]	19.79	0.6732
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.005G187700 [exp]	25.09	0.6365
AT3G58790		GAUT15	galacturonosyltransferase 15 (...		Potri.014G142000 [exp]	40.21	0.5748
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.008G084901 [exp]	49.15	0.6375
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	54.11	0.6486
AT4G16580			Protein phosphatase 2C family ...		Potri.011G013000 [exp]	55.15	0.6443
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.014G055300 [exp]	69.82	0.6210
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.002G128201 [exp]	70.09	0.5416
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	80.23	0.5596

Compare expression of checked genes

Potri.019G014362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.