Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58440 603 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G22830 553 / 0 SQE2 squalene epoxidase 2 (.1) AT4G37760 543 / 0 SQE3 squalene epoxidase 3 (.1) AT5G24150 404 / 3e-136 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 385 / 2e-128 SQE6 squalene monoxygenase 6 (.1) AT5G24140 379 / 3e-126 SQP2 squalene monooxygenase 2 (.1) AT5G24155 80 / 8e-18 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014376 [exp] 954 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.015G120900 [exp] 613 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G007600 [exp] 603 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.005G146700 [exp] 593 / 0 AT1G58440 766 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.002G114500 [exp] 591 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 453 / 3e-156 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 115 / 7e-31 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 88 / 1e-20 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121320 [exp] 49 / 5e-07 AT4G37760 54 / 2e-09 squalene epoxidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018654 [exp] 612 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10007718 [exp] 596 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039649 [exp] 575 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011732 [exp] 566 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G014378.1 pacid=42773223 polypeptide=Potri.019G014378.1.p locus=Potri.019G014378 ID=Potri.019G014378.1.v4.1 annot-version=v4.1 ATGGACTCCAAACATATATTTGGAGGAGTTGTAGCAGCTTTCTTGTTCGGGTTTGTTGTACTCTACAGTTCAAGAAGGAGAGAGAATATCAAAGCTTCAG AGAAAAATCGAAGCAAGAAAAGTTTGAAAAGCTCTGGAAATGGAGTGTGCAGATCAAATTTTGCTGGAAATACTGATGTGATCATCGTAGGTGCTGGTGT TGCTGGTTCAGCTCTTGCTTATGCTCTCGCAAAGGATGGATGGCGCGTGCAAGTTATTGAAAGAGACTTGGCTGAGCCCGACAGAATTGTTGGTGAGGTC CTGCATGCTGGGGGCTGCATTAAATTGGCCGAGTTAGGTCTTCAAGACTGTCTAGATGGGATTGATTCTCAGATAGTCTTCAGTTTCGCTGCTGTTCACA AAGATGGGAAAAGAACTGCAATTTCATATCCCGCCAATGCGAGTGGCAGAGGCTTTCACAATGGCCGCTTCATCCAGAAACTACGTGAAAAAGCCGCATC TCTTCCCAATGTTAAACTCGATCAAGGAACTGTAACATCTCTTGTCGAAGAAAATGGAACTATCAAAGGTGTGCTATACAAAACAAAGGCAGGCCAGGAG TTAGTAGCTTCAGCTTCACTCACAATAGTATGTGATGGTTGTTTTTCAAATTTACGACGCAATCTCTGCAATCCAAAGATTGAAGTCCCATCTTACTTTG TTGGTTTGGTCCTGGAGAATTATAATCTTCCATATGCAAATCGGGCATACTTTATTTTGAAGGATACAATTGTCATAGCTTATCCAATTAGCAGCAATGA AATTCGTTGTTTAGTTGATGTACCTGGCTCGAAACAACCACCTATTTCCAATGGCGAAATGGCAAGCTACTTGAAAACAGTGGTGGCACCTCAAATGCCA CCTGAGCTATACAATGCTTTCATATGTGCAATTGATAAGGGCAACATAAGAACAATGCCAAACAGAATCATGCCTGCGTCTCCCTATCCAACCCCTGGTG CATTTCTAATAGGGGATTCGTTGAATATGCGCCATGCTGTAACTGGAGGAGGAATGACCGTGGGACTTTCTGATGTTGTTCTACTGCGAGATCTTCTTAG GCCTCTGAATGATCTTAGTGATGGAGCTTCCATTTGCAAATATCTTGAATCCTTTTACATTCTGCGTAAGCCAACGGCATTTGCAATAAACACATTGGCA AGCACCCTACACACAGTATTCTCTTCATCGGATCAGGATCCATCAAGGAAGGAAATGAAAGAAGCATTCTTCAATTATTTGAGCCTTGGAGGCGTGTTCT CAGAAGGACTGATGGCTCTTCTGTCTGGTCTAAACCCTGACCCGTTGAGCTTGGTTTTCCACTGCTTTGCCATGCTTGCCTATGCTGTTGGCCGCTTATT GCTTCCATTTCCTACACCAAAACGCATGTGTATTGCGGCAAAACTAATTTTGGTTGGATCAGGCATCATCTTCCCTATACTAAAGGCAGAAGGAATTAGA GCAACATTCCTCCCGGCAACAATGCCTGCTTACTACAGAACTCCTCCTGTCCAATCCACTGATGATAGAGAAACAGGGAAATAG
AA sequence Show only first row Show all	>Potri.019G014378.1 pacid=42773223 polypeptide=Potri.019G014378.1.p locus=Potri.019G014378 ID=Potri.019G014378.1.v4.1 annot-version=v4.1 MDSKHIFGGVVAAFLFGFVVLYSSRRRENIKASEKNRSKKSLKSSGNGVCRSNFAGNTDVIIVGAGVAGSALAYALAKDGWRVQVIERDLAEPDRIVGEV LHAGGCIKLAELGLQDCLDGIDSQIVFSFAAVHKDGKRTAISYPANASGRGFHNGRFIQKLREKAASLPNVKLDQGTVTSLVEENGTIKGVLYKTKAGQE LVASASLTIVCDGCFSNLRRNLCNPKIEVPSYFVGLVLENYNLPYANRAYFILKDTIVIAYPISSNEIRCLVDVPGSKQPPISNGEMASYLKTVVAPQMP PELYNAFICAIDKGNIRTMPNRIMPASPYPTPGAFLIGDSLNMRHAVTGGGMTVGLSDVVLLRDLLRPLNDLSDGASICKYLESFYILRKPTAFAINTLA STLHTVFSSSDQDPSRKEMKEAFFNYLSLGGVFSEGLMALLSGLNPDPLSLVFHCFAMLAYAVGRLLLPFPTPKRMCIAAKLILVGSGIIFPILKAEGIR ATFLPATMPAYYRTPPVQSTDDRETGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.019G014378 [exp]	0	1
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.011G021216 [exp]	11.83	0.9408
AT1G16000			unknown protein		Potri.004G051201 [exp]	20.00	0.8866
AT5G17680			disease resistance protein (TI...		Potri.019G070001 [exp]	22.24	0.9329
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.015G133100 [exp]	27.91	0.8995	AAT1.2,PtrCAT12
AT3G14470			NB-ARC domain-containing disea...		Potri.006G272066 [exp]	34.30	0.9119
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.011G060000 [exp]	35.84	0.8630
AT1G60160			Potassium transporter family p...		Potri.010G094400 [exp]	39.94	0.8605
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108766 [exp]	44.63	0.9169
AT1G03670			ankyrin repeat family protein ...		Potri.018G077633 [exp]	50.73	0.9136
AT1G09240		ATNAS3	ARABIDOPSIS THALIANA NICOTIANA...		Potri.005G014300 [exp]	55.96	0.9092

Compare expression of checked genes

Potri.019G014378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.