Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 275 / 9e-89 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37060 265 / 8e-85 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 259 / 2e-82 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT5G43590 236 / 1e-73 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37050 206 / 5e-62 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT3G63200 109 / 3e-26 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT3G54950 97 / 1e-21 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT2G39220 76 / 2e-14 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT4G29800 71 / 4e-13 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014390 [exp] 775 / 0 AT2G26560 264 / 2e-84 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014386 [exp] 654 / 0 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014382 [exp] 654 / 0 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014405 [exp] 430 / 3e-149 AT2G26560 275 / 7e-89 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014401 [exp] 356 / 4e-120 AT4G37060 212 / 2e-64 phospholipase A IVB, PATATIN-like protein 5 (.1.2) Potri.019G014398 [exp] 350 / 2e-117 AT2G26560 257 / 3e-81 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.002G128300 [exp] 287 / 2e-93 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G034000 [exp] 275 / 1e-88 AT2G26560 529 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133850 [exp] 267 / 1e-85 AT2G26560 521 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 273 / 3e-88 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 232 / 2e-71 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 232 / 2e-71 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10023512 [exp] 112 / 7e-27 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10040394 [exp] 108 / 1e-25 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10036526 [exp] 104 / 4e-24 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 102 / 2e-23 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10028347 [exp] 87 / 2e-18 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10038349 [exp] 80 / 5e-16 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 75 / 8e-15 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.019G014384.1 pacid=42773447 polypeptide=Potri.019G014384.1.p locus=Potri.019G014384 ID=Potri.019G014384.1.v4.1 annot-version=v4.1 ATGGGGAATGGGTGTTCGAGTACATCAGATCATGATCATCAAGGCTTGACAACAATCCTTAGCATTGATGGGGGAGGAGTGAGAGGCATCATTCCTAGCA TAGTCCTTGCAGCTCTTGAAGCTAAGCTTCAGAAGTTGGATGTGGAAAACAAGGATGCGAGGATTGCAGATTATTTTGACTTTATTGCTGGGACAAGCAC AGGTGGTCTTATGACTGCCATGCTTACTACTCCGAATGCAGAAAAACGACCTTCGTTTGCAGCAAAAGATATTGTCAAGTTTTATCTGGAGAAGAGCCCA CTCATATTTCCTCAAACCACCAAACAGTCACTTGAAGACGACCACCTTTTCAATAATGAAGCTGCGATCAACTCTTTATTCTATGAAGCAAAAAAGCACG TCCAGCAATGTTACCAAACGATGTGTCATGAAATTATAGATCATCTGATAGCTACACTGCGGTATCTTTCAGCGTGCACATGGCTTCCTAACTTCTTGCG TGAGAGACTTGGAAAGACTCTACTGTTTCCAAAGTATGATGGTGTCAAACTACATGAGGTAATTAACGAAGAAATGGGACAGAAACTTCTCAGTGATGCG CTAACTAACGTGATAATCCCCACTTTCGACATCAAGCTTTTTCAGCCAATCATATTCTCCAGCTTAGAGGCACAACGTGATAAGTCAACGGATGCTCGAA TAGCAGACGTTTGCATTGGCACGTCAGCAGCGCCATCTTACTTCCCTCCATATTTTTTTAAAACAACCGTTGATTTCAACTTAGCTGATGGCGGTCTGGC AGCCAACAATCCTTCATTGATAGCCGTGTGTGAGGTGATGAAAGAACAAAAGACGGATCGTCGTAAGCCTCTTATTCTTTCACTTGGAACTGGAGCAACA AATCAAAGTGACAGGTATGAGGTTGGACCAGATCCCAGAGAATGGGGCATCTTAAGATGGCTTTGGTATAGCGAGAACAACGGCAGCCCATTGATAGAAA TCTTGACAACTGCATCGGATGAGATGATTTCCACGTATATATCCTCATTCTTTCAATATTGTGGTTGGGAAGATAACTATTATCGGCTTCAGGCTGAGAT GAAACTCTCTGACGCCAAGATGGACGATGCAAGCCAATCAAATTTGAAAAATCTTGTGAAGATCGGTGAAGATCTTGCAGCAAAGCACGATGCCGAACTT GAAGCCCTTGCGCAAAACTTGATTGAGAACCGGAAAGCTCGCAATATGGCAAGCATGGCTGTTTGA
AA sequence Show only first row Show all	>Potri.019G014384.1 pacid=42773447 polypeptide=Potri.019G014384.1.p locus=Potri.019G014384 ID=Potri.019G014384.1.v4.1 annot-version=v4.1 MGNGCSSTSDHDHQGLTTILSIDGGGVRGIIPSIVLAALEAKLQKLDVENKDARIADYFDFIAGTSTGGLMTAMLTTPNAEKRPSFAAKDIVKFYLEKSP LIFPQTTKQSLEDDHLFNNEAAINSLFYEAKKHVQQCYQTMCHEIIDHLIATLRYLSACTWLPNFLRERLGKTLLFPKYDGVKLHEVINEEMGQKLLSDA LTNVIIPTFDIKLFQPIIFSSLEAQRDKSTDARIADVCIGTSAAPSYFPPYFFKTTVDFNLADGGLAANNPSLIAVCEVMKEQKTDRRKPLILSLGTGAT NQSDRYEVGPDPREWGILRWLWYSENNGSPLIEILTTASDEMISTYISSFFQYCGWEDNYYRLQAEMKLSDAKMDDASQSNLKNLVKIGEDLAAKHDAEL EALAQNLIENRKARNMASMAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014384 [exp]	0	1
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054733 [exp]	29.49	0.6429
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	34.58	0.6013
AT1G52565			unknown protein		Potri.006G069100 [exp]	46.79	0.5938
AT3G60450			Phosphoglycerate mutase family...		Potri.002G141000 [exp]	48.46	0.5975
					Potri.003G212150 [exp]	149.89	0.5281
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G448000 [exp]	181.92	0.5262
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.009G029600 [exp]	202.16	0.5298
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144500 [exp]	257.50	0.5085

Compare expression of checked genes

Potri.019G014384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.