Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 51 / 4e-09 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37070 45 / 4e-07 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 45 / 5e-07 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT3G54950 36 / 0.0009 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014386 [exp] 87 / 7e-22 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014382 [exp] 87 / 7e-22 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014390 [exp] 81 / 6e-20 AT2G26560 264 / 2e-84 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014384 [exp] 80 / 2e-19 AT2G26560 274 / 2e-88 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014405 [exp] 77 / 2e-18 AT2G26560 275 / 7e-89 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014398 [exp] 62 / 5e-13 AT2G26560 257 / 3e-81 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.007G042200 [exp] 53 / 6e-10 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.019G014401 [exp] 52 / 2e-09 AT4G37060 212 / 2e-64 phospholipase A IVB, PATATIN-like protein 5 (.1.2) Potri.002G128300 [exp] 50 / 1e-08 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 54 / 2e-10 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10040394 [exp] 38 / 0.0002 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 38 / 0.0002 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G014388.1 pacid=42773919 polypeptide=Potri.019G014388.1.p locus=Potri.019G014388 ID=Potri.019G014388.1.v4.1 annot-version=v4.1 ATGGGGAATGGAAGTTCGAGTGGATCAGGTCCTGATGATCAAGGCTTTGAAACAATCCTCAGCATTGACGGGGGAGGAGTGAGAGGAATCGTTCCTAGCG TAGTCCTTACTGCTCTAGAAGCTAAGCTTCAGAAGTTGGATGTGGATAACAAGGATGCGAGGATCCAGTGCGGGTGTGTACGTGTTGTTACAATTAATTT TTATTTGTGA
AA sequence Show only first row Show all	>Potri.019G014388.1 pacid=42773919 polypeptide=Potri.019G014388.1.p locus=Potri.019G014388 ID=Potri.019G014388.1.v4.1 annot-version=v4.1 MGNGSSSGSGPDDQGFETILSIDGGGVRGIVPSVVLTALEAKLQKLDVDNKDARIQCGCVRVVTINFYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014388 [exp]	0	1
AT1G49230			RING/U-box superfamily protein...		Potri.001G309600 [exp]	1.41	0.7270
					Potri.001G236533 [exp]	14.38	0.6742
AT3G51750			unknown protein		Potri.016G124000 [exp]	14.96	0.6627
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	17.97	0.6302	PtrGrx20
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.019G099300 [exp]	30.04	0.6231
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.019G099500 [exp]	33.76	0.6391
					Potri.010G200301 [exp]	36.33	0.6073
					Potri.006G183466 [exp]	47.37	0.5887
					Potri.003G060432 [exp]	47.71	0.6456
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	47.83	0.5887

Compare expression of checked genes

Potri.019G014388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.