Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 264 / 2e-84 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37070 239 / 3e-75 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT5G43590 226 / 6e-70 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37060 209 / 5e-63 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37050 196 / 4e-58 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT3G63200 110 / 2e-26 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT3G54950 76 / 1e-14 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT2G39220 76 / 1e-14 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT4G29800 71 / 3e-13 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014384 [exp] 775 / 0 AT2G26560 274 / 2e-88 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014386 [exp] 664 / 0 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014382 [exp] 664 / 0 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014405 [exp] 431 / 1e-149 AT2G26560 275 / 7e-89 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014401 [exp] 354 / 2e-119 AT4G37060 212 / 2e-64 phospholipase A IVB, PATATIN-like protein 5 (.1.2) Potri.019G014398 [exp] 347 / 5e-116 AT2G26560 257 / 3e-81 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.002G128300 [exp] 275 / 2e-88 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G034000 [exp] 267 / 1e-85 AT2G26560 529 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.007G042200 [exp] 261 / 1e-83 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 254 / 9e-81 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 221 / 3e-67 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 221 / 3e-67 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10041402 [exp] 116 / 2e-28 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10040394 [exp] 99 / 4e-22 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 92 / 9e-20 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10028347 [exp] 82 / 2e-16 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10036526 [exp] 75 / 2e-14 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10022040 [exp] 73 / 4e-14 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10038349 [exp] 61 / 9e-10 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.019G014390.1 pacid=42773222 polypeptide=Potri.019G014390.1.p locus=Potri.019G014390 ID=Potri.019G014390.1.v4.1 annot-version=v4.1 ATGGGGAATGGGTGTTCGAGTACATCAGATCATGATCATCAAGGCTTGACAACAATCCTTAGCATTGATGGGGGAGGAGTGAGAGGCATCATTCCTAGCA TAGTCCTTGCAGCTCTTGAAGCTAAGCTTCAGAAGTTGGATGTGGACAACAAGGATGCGAGGATTGCAGATTATTTTGACTTTATTGCTGGGACAAGCAC AGGTGGTCTTATGACTGCCATGCTTACTACTCCGAATGCAGAAAAACGACCTTCGTTTGAAGCAAAAGATATTGTCAACTTTTATCTGGAGAAGAGCGCA CTCATATTTCCTCAAACCACCCTAAAATCACTTGAAGACGACCAACTTTCATATGATGAAGCTGCGATCAACTCTTCGCTTGATGAAGCAACCAAGCAGA TTCAGCAATATTACGAAATGAGTCATAAAATTATAGATCCTCTGATAGCTACACTGCGGTATCTTTTAACGTGCACATGGCTTCCAAACTTCTTCCGTAA GAGACTTGGAAAGACTCTACTGTTTCCAAAGTATGATGGTGTCAAACTACATGAGGTAATTAACGAAGAAATGGGACAGAAACTTCTCAGTGATGCGCTA ACTAACGTGATAATCCCCACTTTCGACATCAAGCTTTTTCGGTCAATCATATTCTCCAGCTTAAAGGCACAACGTGATAAGTCAGCGGATGCTCGAATAG CAGACATTTGCATTGGAACGTCTGCAGCGCCATCTTACTTCCCTCCATATTCTTTTAAAACAACCGTTGATTTCAACCTAGCTGATGGCGGTCTGGCAGC TAACAATCCTTCATTGATAGCCGTGTGTGAGGTGATGAAAGAACAAAAGACGGATGGTCGTAAGCCTCTTATTCTTTCACTTGGAACTGGAGCAGCAAAT CAAAGTGACAGGTATGAGGTTGGATCAGATCCCAGCAAATGGGGCATCTTAAGATGGCTCTGGTATAGCGAGAACAACGGCAGCCCATTGATAGAAATCT TGACAACTGCATCGGATGAGATGATTTCCACGTATATATCCTCATTCTTTCAATATTGTGGTTGGGAAGATAACTATTATCGGCTTCAGGCTGAGATGAA ACTCTCTGACACCAAGATGGACGATGCAAGCCAAGAAAATTTGAAAAAACTTGTGAAGATCGGTGAAGATCTTGCAGCAAAGCAAGATGCCGAACTTGAA GCCCTTGCGCACAAATTGATTGAGAACCGGAAAGCTCGCAATATGGCAAGCATGGCTGTCTGA
AA sequence Show only first row Show all	>Potri.019G014390.1 pacid=42773222 polypeptide=Potri.019G014390.1.p locus=Potri.019G014390 ID=Potri.019G014390.1.v4.1 annot-version=v4.1 MGNGCSSTSDHDHQGLTTILSIDGGGVRGIIPSIVLAALEAKLQKLDVDNKDARIADYFDFIAGTSTGGLMTAMLTTPNAEKRPSFEAKDIVNFYLEKSA LIFPQTTLKSLEDDQLSYDEAAINSSLDEATKQIQQYYEMSHKIIDPLIATLRYLLTCTWLPNFFRKRLGKTLLFPKYDGVKLHEVINEEMGQKLLSDAL TNVIIPTFDIKLFRSIIFSSLKAQRDKSADARIADICIGTSAAPSYFPPYSFKTTVDFNLADGGLAANNPSLIAVCEVMKEQKTDGRKPLILSLGTGAAN QSDRYEVGSDPSKWGILRWLWYSENNGSPLIEILTTASDEMISTYISSFFQYCGWEDNYYRLQAEMKLSDTKMDDASQENLKKLVKIGEDLAAKQDAELE ALAHKLIENRKARNMASMAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014390 [exp]	0	1
AT3G01190			Peroxidase superfamily protein...		Potri.004G023200 [exp]	15.65	0.8563
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.012G049900 [exp]	25.51	0.8464
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G078200 [exp]	32.61	0.8323
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	41.76	0.8397
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.019G125600 [exp]	43.47	0.8407
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	52.12	0.8338	CYP712.2
AT2G43480			Peroxidase superfamily protein...		Potri.007G132800 [exp]	52.53	0.8261
AT5G25460			Protein of unknown function, D...		Potri.001G174400 [exp]	55.49	0.8182
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	56.86	0.8259
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.005G223300 [exp]	69.82	0.8193

Compare expression of checked genes

Potri.019G014390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.