Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37060 212 / 3e-64 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 210 / 1e-63 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT2G26560 207 / 1e-62 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT5G43590 166 / 4e-47 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37050 165 / 2e-46 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT2G39220 89 / 7e-19 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 87 / 2e-18 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 83 / 5e-17 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 72 / 1e-13 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014405 [exp] 401 / 7e-138 AT2G26560 275 / 7e-89 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014386 [exp] 365 / 6e-124 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014382 [exp] 365 / 6e-124 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014384 [exp] 353 / 6e-119 AT2G26560 274 / 2e-88 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014390 [exp] 353 / 6e-119 AT2G26560 264 / 2e-84 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014398 [exp] 343 / 9e-115 AT2G26560 257 / 3e-81 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.002G128300 [exp] 274 / 3e-88 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.007G042200 [exp] 254 / 8e-81 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.017G133850 [exp] 230 / 2e-71 AT2G26560 521 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 252 / 8e-80 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 181 / 4e-52 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 181 / 4e-52 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10040394 [exp] 137 / 1e-35 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 127 / 7e-32 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10041402 [exp] 122 / 1e-30 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10028347 [exp] 91 / 1e-19 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10036526 [exp] 89 / 8e-19 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10038349 [exp] 74 / 4e-14 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 67 / 5e-12 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.019G014401.1 pacid=42774719 polypeptide=Potri.019G014401.1.p locus=Potri.019G014401 ID=Potri.019G014401.1.v4.1 annot-version=v4.1 ATGGGGAGCGAATGTGCAATTCAACCACATCCTAATGAAGGAGTTATCACAATCCTTAGCATTGACGGTGGAGGAGTGAGAGGCATCATTCCTAGCGAAG TTCTTGGCTATCTCGAATCAATACTCCAGGGGTTAGAGAATCATAAGGATGTGAGGATTGCAGACTATTTTGACTTCATTGCTGGGACAAGCACAGGAGG CCTCATCACAGCTATGCTTACTGCTACAGAAGATGGAAAACGACCTTTGTTATCTGCAAAAAAAATTATTGGTTTTTATATGGATCACAGTAAGAATATC TTTAAAAAAAATCCTACTGATGAAAACAGCCATGGTCTAGTAGCAAAGACGAAGTCCGACAACGCAAGATTTACTGATGTTATGAAGGACATTATGAACA GCATAAGCAAATGCATCAGCAGCAACAGCAGCAACAGCAGCAGCAACATTTTGGATAGTTTCTTGAGGCGCTTTATAAGTTGGCATCAAATTCCTCAAAC AATCCGTGAAATGGTTATGCATTTCCTAGAACCAAAATATGATAGTGACAATCTGAAGGAGGCCATCAAGGAATGCTTACGAAAGGAACCTCGAATCAGT GAGACTATCACTAATGTGATAATTCCCACTTTTGACATCAAGCGTTTTCGGCCTATCATCTTCTCTACCTTGAAGGCAAAAAGGGACGACTCAATGAATC CTCTACTGTCAGAAGTTTGTATTGCGACGTCAGCAGCACCATATTACTTCCCCCCTCATCTTTTGACAGCCAGCGCCAAGGAATTCCACTTAGTTGATGG TGGTGTTGCAGCCAATAATCCTTCTTTGCTAGCCTTATGTGAGGTGATCAAAGAGAGAAAGGTCGATTACAGTAAGATTCTTCTTCTGTCCCTTGGAACT GGGGAACAAAATGGAAAGGATAAGCTGGAGGTTGGAGATCCTAGCAAGTGGGGCATCGTTAAATGGATATGGCAAAATGGCAAGTCCAATCCATTGCTTG ATATTCTTATGACTTCAGCAGATGAAATGATTGAGATTTACATGTCCAGCATCTTTCAATCACGTGGATTAAAAGATAACTATATTCGTATCCAGGCTGA CCTAAGTTCTGTTGAAGCCGCGTTCGACGACTCGCGTGAAGAAAATCTAAAATGTCTCACGAAGATTGGTCAAGATCTGGTGGAAAAGAATGAAGACATA CTTACAGACTTCGCGAAAAAATTGGTAGATATAAAGAAGGCTCGCTCTCTAAAGTGTTTCCTCTGA
AA sequence Show only first row Show all	>Potri.019G014401.1 pacid=42774719 polypeptide=Potri.019G014401.1.p locus=Potri.019G014401 ID=Potri.019G014401.1.v4.1 annot-version=v4.1 MGSECAIQPHPNEGVITILSIDGGGVRGIIPSEVLGYLESILQGLENHKDVRIADYFDFIAGTSTGGLITAMLTATEDGKRPLLSAKKIIGFYMDHSKNI FKKNPTDENSHGLVAKTKSDNARFTDVMKDIMNSISKCISSNSSNSSSNILDSFLRRFISWHQIPQTIREMVMHFLEPKYDSDNLKEAIKECLRKEPRIS ETITNVIIPTFDIKRFRPIIFSTLKAKRDDSMNPLLSEVCIATSAAPYYFPPHLLTASAKEFHLVDGGVAANNPSLLALCEVIKERKVDYSKILLLSLGT GEQNGKDKLEVGDPSKWGIVKWIWQNGKSNPLLDILMTSADEMIEIYMSSIFQSRGLKDNYIRIQADLSSVEAAFDDSREENLKCLTKIGQDLVEKNEDI LTDFAKKLVDIKKARSLKCFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37060		AtPLAIVB, PLP5,...	phospholipase A IVB, PATATIN-l...		Potri.019G014401 [exp]	0	1
AT5G45480			Protein of unknown function (D...		Potri.006G011200 [exp]	2.44	0.9862
AT5G45530			Protein of unknown function (D...		Potri.010G154866 [exp]	3.00	0.9801
AT1G73850			Protein of unknown function (D...		Potri.015G046900 [exp]	3.16	0.9869
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050701 [exp]	3.46	0.9888
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127600 [exp]	3.74	0.9828
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G018200 [exp]	6.16	0.9743
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050501 [exp]	7.74	0.9781
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281800 [exp]	10.86	0.9652
AT1G78850			D-mannose binding lectin prote...		Potri.011G110500 [exp]	14.28	0.9639
AT3G18670			Ankyrin repeat family protein ...		Potri.011G019600 [exp]	15.62	0.9499

Compare expression of checked genes

Potri.019G014401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.