Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14050 990 / 0 MCM9 minichromosome maintenance 9 (.1) AT1G44900 264 / 1e-76 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT3G09660 248 / 7e-72 MCM8 minichromosome maintenance 8 (.1) AT2G07690 234 / 3e-67 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 236 / 6e-67 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G44635 231 / 1e-65 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 225 / 1e-63 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 221 / 2e-62 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070500 [exp] 265 / 6e-77 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.009G121500 [exp] 238 / 4e-68 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G188700 [exp] 236 / 7e-68 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 236 / 2e-67 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.001G074000 [exp] 233 / 4e-66 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.018G112800 [exp] 229 / 2e-65 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 227 / 2e-64 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 216 / 7e-61 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.003G157001 [exp] 48 / 5e-07 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023780 [exp] 1052 / 0 AT2G14050 1003 / 0.0 minichromosome maintenance 9 (.1) Lus10009052 [exp] 266 / 7e-76 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009683 [exp] 262 / 2e-74 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10023169 [exp] 233 / 4e-66 AT3G09660 1038 / 0.0 minichromosome maintenance 8 (.1) Lus10038384 [exp] 231 / 2e-65 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 229 / 1e-64 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 229 / 1e-64 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10015267 [exp] 229 / 2e-63 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 226 / 2e-63 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 216 / 2e-60 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00493 [poplar] [flax] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.019G014403.1 pacid=42773665 polypeptide=Potri.019G014403.1.p locus=Potri.019G014403 ID=Potri.019G014403.1.v4.1 annot-version=v4.1 ATGAAACCGGTCAATGAATCCGAAAGCATGGAGAAGGAAGAAGACAGTGAAGTGAAGTCCTTAGCTGAGTTTCTGATGACCCATCACTCTGAACAGCTTC ATTCCATAGTCGTCTCTCCAGACCCTAAGCTTCATTACCCTCTCTACATCGATTTTACAGATTTGCTGAACGATAATTCTCGACTTGCTCATCTTGTTTT GGCTCAGCCAACTGTGTACTTGCTGCTTTTCGACCGGGCTGCCTTCTGGGCTCATAAAATTGTGATCAAGGGTTTGAAATTTGGGGAGAAAGGGGTTGAG AAGAAGTTCATTCATGTGCGGATTAATGTATGTGGATCTCCACTTGAATGCCCTGAGACGTTTCCGAGCATTGGGCGTGTGAGAGTGAAGCATCGCGGGA TTCTTCTCACTCTTAAGGGGACTTTAATCAGGTCTGGAGCGATTAAGATGTATGAAGGGGAAAGGATGTATCAGTGTCGGAAATGCAAGCATGTTTTCCC GGTTCACCCTGAGTTGGAAAGTAGAAACTCCATAACACTACCTTCGTTTTGCCCTTCTCAGAGGTCTAAATCCTGTGAAGGCACGAGGTTCGACTGTGTC GATGAATCTGTAATACGCCATGATTACCAGGAAATCAAAATCCAAGAGAGCACACAGGTGTTGGGTGTTGGGGTCATTCCTCGGTCAATTCCTGTTATTC TCATGGATGATCTTGTTGACATTGTAAAAACAGGAGATGATATCATTGTTACTGGGATTTTGACTGCAAAATGGTCTCCTGATTTAAAAGATGTTCGATC CAATCTTGATCCTGTATTAATTGCTAATTATGTGAGGAGAACTAACGAGCTGAAAGCAGATATTGACATCCCCAATGATGTTATAATGAAATTCAAGCAG TTCTGGTCAGATTTCAATGATACTCCTTTGAAAGGGAGAAATGCCATTCTGCGAGGTCTCTGCCCCCAAATTTTTGGACTCTTCACTGTGAAGCTTGCTG TTACATTAACACTTATTGGAGGGGTGCAACATGTTGATGCTTCTGGTTCAAAGATTCGAGGAGAGTCTCATTTGCTTTTGGTTGGTGATCCAGGTACGGG GAAGTCTCAGTTCTTAAAATTTGCTGCAAAGCTGAGCAACCGGTCTGTTATCACTACTGGGTTGGGGAGTACTAGTGCAGGATTAACTGTCACTGCAGTC AAGGATGGAGGGGAGTGGATGTTGGAAGCTGGAGCCCTTGTTCTGGCAGATGGAGGGCTTTGTTGCATTGATGAATTTGACAGCATGAGGGAGCATGACA GGGCAACGATACATGAAGCAATGGAGCAACAGACTATAAGTGTTGCTAAGGCTGGTCTTGTTACTACTTTAAGTACTAGGACAATTGTCTTTGGTGCAAC AAATCCCAAAGGACAGTATGACCCTGATCAATCTCTCTCTGTCAACACTGCACTCTCGGGACCGTTATTGAGCAGATTTGACATTGTTTTGGTCCTCTTG GATACGAAGAATCCTGAATGGGATGCTGTTGTATCGTCTCACATTCTCAATGAGGGTGAATCAAACAAAGGAGATCATGATGAAGATTTGGGTAATATCT GGACATTTTCTATGCTTCGCAGGTATATTCATTTTGTTAAGGGGTACTTCAGGCCTGTGCTTACCAAGGAAGCTGAAAAGGTTATTTCAAGTTATTATCA ACTCCAACGAAGATCTGCAACTTATAATGCAGCCAGGACTACCGTGCGCATGCTGGAAAGTTTGATACGCCTAGCTCAAGCACATGCAAGACTTATGTTC AGAAATGAGGTCACTCGGATAGATGCCATTATGGCAATTTTATGTATCGAATCATCTATGACTACATCAGCCATTGTTGACAGTGTTGGGAATTCCCTGC ACTCAAATTTCACAGAAAATCCTGATGAAGAATATGCCAAGCAGGAGGGACTAATACTTGAAAAGTTGAGATCGTTTGATGAGTTTTCTGATGTTAACAT CATAGAAGGATTGTCTAGATGA
AA sequence Show only first row Show all	>Potri.019G014403.1 pacid=42773665 polypeptide=Potri.019G014403.1.p locus=Potri.019G014403 ID=Potri.019G014403.1.v4.1 annot-version=v4.1 MKPVNESESMEKEEDSEVKSLAEFLMTHHSEQLHSIVVSPDPKLHYPLYIDFTDLLNDNSRLAHLVLAQPTVYLLLFDRAAFWAHKIVIKGLKFGEKGVE KKFIHVRINVCGSPLECPETFPSIGRVRVKHRGILLTLKGTLIRSGAIKMYEGERMYQCRKCKHVFPVHPELESRNSITLPSFCPSQRSKSCEGTRFDCV DESVIRHDYQEIKIQESTQVLGVGVIPRSIPVILMDDLVDIVKTGDDIIVTGILTAKWSPDLKDVRSNLDPVLIANYVRRTNELKADIDIPNDVIMKFKQ FWSDFNDTPLKGRNAILRGLCPQIFGLFTVKLAVTLTLIGGVQHVDASGSKIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGQYDPDQSLSVNTALSGPLLSRFDIVLVLL DTKNPEWDAVVSSHILNEGESNKGDHDEDLGNIWTFSMLRRYIHFVKGYFRPVLTKEAEKVISSYYQLQRRSATYNAARTTVRMLESLIRLAQAHARLMF RNEVTRIDAIMAILCIESSMTTSAIVDSVGNSLHSNFTENPDEEYAKQEGLILEKLRSFDEFSDVNIIEGLSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14050		MCM9	minichromosome maintenance 9 (...		Potri.019G014403 [exp]	0	1
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	6.32	0.7393
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	15.09	0.7111
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.002G003700 [exp]	16.97	0.6911
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	18.57	0.6498
AT1G79890			RAD3-like DNA-binding helicase...		Potri.001G182600 [exp]	21.16	0.6840
AT1G53903			Protein of unknown function (D...		Potri.003G071900 [exp]	26.83	0.6579
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	26.94	0.7179
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.005G123900 [exp]	28.49	0.6501
AT3G43660			Vacuolar iron transporter (VIT...		Potri.011G146100 [exp]	34.35	0.7049
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	42.70	0.6663

Compare expression of checked genes

Potri.019G014403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.