Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21980 948 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 936 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 846 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT3G07960 705 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 686 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 667 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G09920 422 / 2e-136 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G10900 383 / 4e-122 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G60890 384 / 6e-122 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G01460 270 / 4e-83 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G139900 [exp] 1291 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 974 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 969 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 682 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.001G027900 [exp] 664 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 664 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.006G121200 [exp] 443 / 3e-144 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 400 / 3e-128 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 378 / 7e-120 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018200 [exp] 950 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 945 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 937 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10039507 [exp] 672 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 671 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 645 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039011 [exp] 625 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 619 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 619 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10008651 [exp] 602 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01504 [poplar] [flax] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.019G015768.1 pacid=42774636 polypeptide=Potri.019G015768.1.p locus=Potri.019G015768 ID=Potri.019G015768.1.v4.1 annot-version=v4.1 ATGCAAGAGACCCTTCTGGCCACACTATCAGAAAACCCCAAAATCAAAGCCAAAAACAGCAAAGATGTGTCTCTGCTAGTCCCCTCACCGTGCCATCTAG TGACCACAAGAACCCGATCCCAGCCCAACTACCGGCGCGTGACTCCCACGCGTGACGCGACGACCACCACCATCAATTCTCGTATTGACACCGGCTGTTC CTTGGTGGAGAAGGTGCTGCCCAATGGGGATATTTATACTGGGGGGTTGGTGGATGGTGTGCCACATGGGAAGGGGAAGTATTTGTGGTGTGATGGGTGT ATGTATGAAGGAGAGTGGAAGAGAGGGAAGGCTAATGGAGGTGGGAAGTTTTCTTGGCCATCAGGAGCTACTTATGAAGGTCAGTTTAAGTTAGGGAGAA TGGATGGTTACGGTACTTTTATTGGTGTAGATGGTGAAGTTTATAGTGGAAATTGGGTGAGTGATAAAAAGCATGGCTTTGGTGAGAAAAGGTACGCCAA TGGGGATGTTTATCAAGGTTTGTGGAAGTTTAATTTGCAGGATGGGGAAGGGAAGTATAGGTGGTGTAATGGGAATGAGTATGTTGGTGAGTGGAAACAT GGGGTGATATCTGGGAAAGGGGTATTGGTTTGGGCTAATGGGAAGAGGTATGAAGGGTACTGGGAAAATGGGGTGCCTAAAGGGAAAGGAATGTTTACAT TTGGTAGTGGGAATGTGAATGGGAGAGTTGTTGGTGGTGGTGGAGAGGATTTTAAAGGGGTGGCATTGGATCCAGTAGTTGGGGCTGGGGGAGGGAGGAA GAGGTCATCAGTGGATGGGAATTTTCCTCGGATTTGTATTTGGGAGTTGGATGGGGAGGCTGGTGATATTACTTGTGATATTGTTGATAATGTGGAGGCT TCTATGTTTTATAGAGATGGTAATGATGATAATGGAGGTGGATGTGAGGGTAATGTGCAGCAGCAGCTGCAGCCAGGTAGAAGTCCTTGTAGTTCTGTTG ATGGTGAGGTTAATAAGAAACAAGGACAAACGATTTCGAAAGGGCACAAGAATTATGATTTGATGCTTAATCTTCAACTGGGTATCAGGCATTCTGTGGG GAAGCATGATGCAATAATGAGGGAACTAAGACACAGTGATTTTGATCCTAAAGAAAAGTTCTGGACAAGGTTTCCACCGGAAGGATCGAAGTCTACGCCT CCACATCAATCTGTGGATTTCAGATGGAAGGATTACTGTCCCATGGTATTCAGACATCTGAGGGAATTGTTTGCAATAGATCCAGTGAATTACATGCTAG CGATTTGTGGAAGTGATGCACTTAGAGAATTTTCTTCCCCTGGGAAGAGTGGAAGCTTCTTTTATCTAACTCAAGATGATCGTTTCATGATCAAAACTGT GAAAAAATCTGAAGTCAAGGTTCTTATTAAGATGCTTCCAAGTTACTACCAACATGTTTGCCAGTACAAGAACTCCTTGGTAACGAAGTTCTTTGGTGTA CATTGTGTTAAACCAGTGGGAGGTCAAAAGACTCGTTTTGTTGTAATGGGAAACCTGTTTTGTTCCGAGTACCGTATCCATAAACGCTTTGACTTGAAAG GTTCTTCTCATGGACGCACGACTGACAAGCTTGAGGGTGAAATTGATGAAACAACCACACTTAAGGACCTCGATCTAAACTTTGTATTTCGCCTGGAACG GTCATGGTTTAATGAACTCATTAGTCAAGTTTATAGGGACTGTGAATTCTTAGAAGCAGAGAGAATTATGGATTATAGTCTTCTAATTGGTCTACACTTC CGTGATGATTACTCTAGTGAGGAGATGATGTCGCCAAATGACAAGCATTTTGAAAAAAGAAATTCACATCACGAGGAAACATCGATGCGGGGTTATCATT TGCTGCCCAATATGGATTGGGTCATGGAAGGCCGGGGGCCATTCATCCGGCTGGGGGCAAATGTGCCTGCAAGAGCCGAGCGTGTAATGAGGACTACTGA AATGGATCAGTGCATGGGGGGTGGAAGTAACAATTCAACACCTTCACATAATGGTAATGAGATCTTCGATGTAGTTCTTCACTTTGGTATCATTGACATC CTCCAGGATTATGATATCAGCAAAAAGCTAGAGCATGCATACAAGTCCTTACAAGTGGATCCCACGTCTATCTCAGCTGTTGATCCCAAGTTATACTCGA AAAGATTCCGAGATTTCATACATAGAATCTTCATAGAGGACAAGTAA
AA sequence Show only first row Show all	>Potri.019G015768.1 pacid=42774636 polypeptide=Potri.019G015768.1.p locus=Potri.019G015768 ID=Potri.019G015768.1.v4.1 annot-version=v4.1 MQETLLATLSENPKIKAKNSKDVSLLVPSPCHLVTTRTRSQPNYRRVTPTRDATTTTINSRIDTGCSLVEKVLPNGDIYTGGLVDGVPHGKGKYLWCDGC MYEGEWKRGKANGGGKFSWPSGATYEGQFKLGRMDGYGTFIGVDGEVYSGNWVSDKKHGFGEKRYANGDVYQGLWKFNLQDGEGKYRWCNGNEYVGEWKH GVISGKGVLVWANGKRYEGYWENGVPKGKGMFTFGSGNVNGRVVGGGGEDFKGVALDPVVGAGGGRKRSSVDGNFPRICIWELDGEAGDITCDIVDNVEA SMFYRDGNDDNGGGCEGNVQQQLQPGRSPCSSVDGEVNKKQGQTISKGHKNYDLMLNLQLGIRHSVGKHDAIMRELRHSDFDPKEKFWTRFPPEGSKSTP PHQSVDFRWKDYCPMVFRHLRELFAIDPVNYMLAICGSDALREFSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLIKMLPSYYQHVCQYKNSLVTKFFGV HCVKPVGGQKTRFVVMGNLFCSEYRIHKRFDLKGSSHGRTTDKLEGEIDETTTLKDLDLNFVFRLERSWFNELISQVYRDCEFLEAERIMDYSLLIGLHF RDDYSSEEMMSPNDKHFEKRNSHHEETSMRGYHLLPNMDWVMEGRGPFIRLGANVPARAERVMRTTEMDQCMGGGSNNSTPSHNGNEIFDVVLHFGIIDI LQDYDISKKLEHAYKSLQVDPTSISAVDPKLYSKRFRDFIHRIFIEDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.019G015768 [exp]	0	1
					Potri.001G062100 [exp]	1.73	0.8776
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	2.23	0.8951
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.008G146600 [exp]	2.44	0.8576	CYCD1.2
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	6.92	0.8547
					Potri.005G146450 [exp]	7.48	0.8299
AT5G19670			Exostosin family protein (.1)		Potri.006G238900 [exp]	8.12	0.8344
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	8.83	0.8441
AT4G32640			Sec23/Sec24 protein transport ...		Potri.002G082900 [exp]	9.16	0.8203
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	11.83	0.8437
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	13.74	0.8553

Compare expression of checked genes

Potri.019G015768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.