Plant FIBer expression Database

Potri.019G016100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G016110
[exp]
166 / 3e-55 ND /
Potri.013G045500
[exp]
77 / 4e-20 ND /
Potri.019G014411
[exp]
47 / 3e-08 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G016100.2 pacid=42773844 polypeptide=Potri.019G016100.2.p locus=Potri.019G016100 ID=Potri.019G016100.2.v4.1 annot-version=v4.1
ATGGAAGCGCGTTTCTATGTTCTTACTATTGTGCTGGTCTTGGCAGTTTTTGCACCCGCAGCAATGACTTGTTATGGCAGAGATATTTCCATCCATAATT
TCTACAAAATAGAGAATTCAAGAATGGTCTTGCAAAGACGTATCCCAGATGATGACTCTCCTTACTATTTGAGGAGAGGAAACACTGCCGCGACCAAGGT
ATCACCTCCGGTGGCCAGCACGTCAAGAGGTCAACATTTATCACCAAATTCACCTCCAGGAGTCATACATTGA
AA sequence
>Potri.019G016100.2 pacid=42773844 polypeptide=Potri.019G016100.2.p locus=Potri.019G016100 ID=Potri.019G016100.2.v4.1 annot-version=v4.1
MEARFYVLTIVLVLAVFAPAAMTCYGRDISIHNFYKIENSRMVLQRRIPDDDSPYYLRRGNTAATKVSPPVASTSRGQHLSPNSPPGVIH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G016100
[exp]
0 1
AT3G23530 Cyclopropane-fatty-acyl-phosph... Potri.010G067700
[exp]
2.44 0.9825
AT1G03055 unknown protein Potri.002G046500
[exp]
3.46 0.9817
AT1G05160 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, ... Potri.012G071300
[exp]
4.89 0.9749
AT5G10530 Concanavalin A-like lectin pro... Potri.007G004200
[exp]
6.00 0.9741
AT4G02780 ATCPS1, ABC33, ... GA REQUIRING 1, CPP synthase, ... Potri.002G052100
[exp]
6.32 0.9729 CPS.1
AT5G14340 MYB AtMYB40 myb domain protein 40 (.1) Potri.001G336700
[exp]
6.78 0.9666
AT1G27040 Major facilitator superfamily ... Potri.002G129500
[exp]
8.48 0.9784
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.001G228200
[exp]
9.74 0.9690
AT3G01190 Peroxidase superfamily protein... Potri.011G027300
[exp]
9.89 0.9763
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Potri.004G021100
[exp]
10.77 0.9586

Potri.019G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.