Plant FIBer expression Database

Potri.019G016120 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G016120.1 pacid=42773385 polypeptide=Potri.019G016120.1.p locus=Potri.019G016120 ID=Potri.019G016120.1.v4.1 annot-version=v4.1
ATGTGGTCTACCAAGGGTCCCAAGCCAATCATGCTGCCCCTCCCAATACACAGCCAGAATCCGGGTCAAAATCCACCACCAACAGTCCAGCTGTGGCGGG
ACTGTTGGTGTCCGAGCCCGAGCAAAACGCCAACACCCCAAGCCACACTTATCCTCATCCTGAAAGGGAAGAGACGGTGGCAGATAAACCGCCAGAAGTC
TAGCCCTATAAAAAGCAGGGGGCGATGCCAGAACAAGGGAGAGGGGGACCAAAAAAAAACCAAACAGAAAGAAGCTCTAGAGGAGCAGGGGATTTCAACT
TCCCCTCACCTAGTTAATCCCATCTGGCGATTCTGTGACCCAAAAACTTCCTAG
AA sequence
>Potri.019G016120.1 pacid=42773385 polypeptide=Potri.019G016120.1.p locus=Potri.019G016120 ID=Potri.019G016120.1.v4.1 annot-version=v4.1
MWSTKGPKPIMLPLPIHSQNPGQNPPPTVQLWRDCWCPSPSKTPTPQATLILILKGKRRWQINRQKSSPIKSRGRCQNKGEGDQKKTKQKEALEEQGIST
SPHLVNPIWRFCDPKTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G016120
[exp]
0 1
AT3G12180 Cornichon family protein (.1) Potri.006G057300
[exp]
3.16 0.7561
AT1G11760 MED32 unknown protein Potri.004G152700
[exp]
5.29 0.7922
AT4G01790 Ribosomal protein L7Ae/L30e/S1... Potri.014G112200
[exp]
6.32 0.7404
AT5G14680 Adenine nucleotide alpha hydro... Potri.017G071700
[exp]
9.38 0.7917
AT4G10130 DNAJ heat shock N-terminal dom... Potri.014G032000
[exp]
10.58 0.7001
AT4G22790 MATE efflux family protein (.1... Potri.001G115400
[exp]
19.28 0.7558
AT5G40660 ATP12 protein-related (.1) Potri.001G338200
[exp]
22.31 0.7676
AT1G16445 S-adenosyl-L-methionine-depend... Potri.007G069400
[exp]
23.51 0.7453
Potri.008G024601
[exp]
27.56 0.7568
AT3G17300 EMB2786 unknown protein Potri.008G100400
[exp]
30.59 0.6508

Potri.019G016120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.