Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 436 / 4e-148 ATTPS21 terpene synthase 21 (.1.2) AT3G14540 392 / 2e-130 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 385 / 8e-128 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 379 / 2e-125 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 372 / 2e-122 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 365 / 7e-120 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 354 / 1e-115 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 348 / 2e-113 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 348 / 4e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29110 335 / 2e-108 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G016700 [exp] 1018 / 0 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 979 / 0 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 966 / 0 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 964 / 0 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 947 / 0 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 938 / 0 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G045300 [exp] 879 / 0 AT5G23960 416 / 3e-140 terpene synthase 21 (.1.2) Potri.019G016122 [exp] 853 / 0 AT5G23960 426 / 7e-144 terpene synthase 21 (.1.2) Potri.019G044900 [exp] 731 / 0 AT5G23960 342 / 8e-112 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 376 / 8e-125 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10042204 [exp] 329 / 3e-106 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 328 / 4e-106 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10040043 [exp] 327 / 3e-105 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10008611 [exp] 326 / 7e-105 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10008614 [exp] 322 / 1e-103 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10014724 [exp] 306 / 9e-98 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10031589 [exp] 290 / 6e-91 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10042202 [exp] 284 / 6e-89 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10033643 [exp] 263 / 3e-80 AT4G16730 356 / 2e-115 terpene synthase 02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G016400.2 pacid=42773212 polypeptide=Potri.019G016400.2.p locus=Potri.019G016400 ID=Potri.019G016400.2.v4.1 annot-version=v4.1 ATGGAAAACACCAATCAGCAAAACAATTCTCGTCGAAAGGCAGATTTCCCACCAAGCTTGTGGGGTTGTAGCTTCGCTTCGTTTTCCTTCCCACAAACGG AATTCAAGTCATACAGCCGACAAGCAGAAGAGTTGAAGGAAAATGTGAAGGACATGCTGATGGCATCCAAAAAGGACCCAGTGGAACATATTGAATTCAT TAATCTGTTATGTCGGCTTGGTGTGTCGTATCATTTTGACAAAGAGATTGAAAACAACCTCAAAGAAATTTTTGCTGACCTTCCTAATCTTCTTGAGAAG CATGACTTTTATCTCTACACTTTGTCACTTCTATTTCGAGTATTCAGACAGCATGGATTCAAAATGCTTTGTGTTGTGTTCGACAAGTTCAAGGACACCA ATGGAGAGTTTAAGAAAACAATCATCAACGATGTCAAAGGCATCCTGAGCTTGTATGAAGCTTCGTTTCTAAGTGTGCATGGTGAACAGATACTGGATGA TGCCCTAGTTTTCACAAAGGCAAACCTGGAGCGTACAAGAATAGAGGCTAGAAAATACATCTCTTTCTACGAAGAAGATGAGTCTCGCAATGACACTCTA CTCAAGTTTGCCAAGATAGATTTCAATCGAGTTCAGTTAATACATCAACAAGAGCTATCCATTCTGTCGAGGTGGTGGAATGATTTAAATTTTGCTGAGG AGTTTCCATATGCAAGAGATAGAATTGTAGAGATCTATTTCTGGGCAAATGGAGTCCATTTCGAGCCTCAATATGCTTTCTCTCGGATGATGGTCACGAA ATATATGAAAATTGTATCACTGGTAGATGATACATATGATGCATATGCATCTTTTGAAGAGATACAACATTTTACTAATGCAATTGAAAGATGCAGCATG AATGCTATTGATCAACTACCTGCCGATTACATGAAAGTTCTTTTTAGAGCTCTTCTGAATCTTTTCAACGAAACTGAGAATGATATGGGAAAGCAAGGAA GATCCTATGCCTCATATTATTTGAAGGAGGAATTCAAAGAATTGGTGAGAGGCTACCATGCGGAGGCGGAGTGGGCAGATAAATGCCATGTCCCAACATT CAATGAGTATGTGCGCAATGGATTAACCACAAGTGCTTATGGGGTAGTTATGGCAGCATCCTTCCTTGGAATGGAAGAAGTTGCAGGAGGGGAGGAGTAT GAATGGCTAAAAAGTAATCCAAAAATTATTAAAGCTGGAAATATGATCGGTCGCTTGATGAATGACTTAGCGAGCCACGAGGATGAACAAAAGAGAGGAG ACTGTGCATCCGGCGTTGAATGCTATATGAAACAATATGATGTATCGGAGAAGAAAGCAATTGAAGAGATCCAAAAGATGGACTCTGATGCGTGGAAGGA TATCAATGAAGATTGCATGAGGCCAACTAATGCTCCAATGCTTCTCCTTCAACATTTTGTTAACCTTGTTCGAGTTACAGATGTTATTTATGAGAATGAT GACGATTCCTACACAATTCCATTAGGTTTAAAAGATTATGTCGCTTTATTATATATTGAGCAACTGCCTCTGTATGAATAA
AA sequence Show only first row Show all	>Potri.019G016400.2 pacid=42773212 polypeptide=Potri.019G016400.2.p locus=Potri.019G016400 ID=Potri.019G016400.2.v4.1 annot-version=v4.1 MENTNQQNNSRRKADFPPSLWGCSFASFSFPQTEFKSYSRQAEELKENVKDMLMASKKDPVEHIEFINLLCRLGVSYHFDKEIENNLKEIFADLPNLLEK HDFYLYTLSLLFRVFRQHGFKMLCVVFDKFKDTNGEFKKTIINDVKGILSLYEASFLSVHGEQILDDALVFTKANLERTRIEARKYISFYEEDESRNDTL LKFAKIDFNRVQLIHQQELSILSRWWNDLNFAEEFPYARDRIVEIYFWANGVHFEPQYAFSRMMVTKYMKIVSLVDDTYDAYASFEEIQHFTNAIERCSM NAIDQLPADYMKVLFRALLNLFNETENDMGKQGRSYASYYLKEEFKELVRGYHAEAEWADKCHVPTFNEYVRNGLTTSAYGVVMAASFLGMEEVAGGEEY EWLKSNPKIIKAGNMIGRLMNDLASHEDEQKRGDCASGVECYMKQYDVSEKKAIEEIQKMDSDAWKDINEDCMRPTNAPMLLLQHFVNLVRVTDVIYEND DDSYTIPLGLKDYVALLYIEQLPLYE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016400 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016500 [exp]	1.00	0.8628
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084100 [exp]	3.16	0.8416
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	5.00	0.7800
AT3G11310			unknown protein		Potri.014G056100 [exp]	6.32	0.7120
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	7.48	0.7669
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084501 [exp]	8.48	0.7490
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	12.96	0.7750
					Potri.015G074450 [exp]	16.43	0.6726
					Potri.005G161366 [exp]	18.70	0.6797
AT4G04650			RNA-directed DNA polymerase (r...		Potri.007G061250 [exp]	20.19	0.6060

Compare expression of checked genes

Potri.019G016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.