Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 464 / 5e-159 ATTPS21 terpene synthase 21 (.1.2) AT3G14540 404 / 4e-135 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 393 / 1e-130 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 392 / 2e-130 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 387 / 4e-128 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 383 / 7e-127 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 363 / 3e-119 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 360 / 6e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 360 / 1e-117 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29110 353 / 1e-115 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G016700 [exp] 1017 / 0 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 1007 / 0 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 987 / 0 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016400 [exp] 964 / 0 AT5G23960 436 / 5e-148 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 960 / 0 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 957 / 0 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016122 [exp] 882 / 0 AT5G23960 426 / 7e-144 terpene synthase 21 (.1.2) Potri.019G045300 [exp] 847 / 0 AT5G23960 416 / 3e-140 terpene synthase 21 (.1.2) Potri.019G045400 [exp] 775 / 0 AT5G23960 368 / 8e-123 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031590 [exp] 389 / 8e-130 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10040043 [exp] 353 / 1e-115 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10042204 [exp] 348 / 1e-113 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10008614 [exp] 347 / 2e-113 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10008611 [exp] 344 / 6e-112 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 330 / 1e-106 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014724 [exp] 316 / 2e-101 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10031589 [exp] 316 / 1e-100 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10042202 [exp] 307 / 8e-98 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10006356 [exp] 261 / 1e-79 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G016500.1 pacid=42774629 polypeptide=Potri.019G016500.1.p locus=Potri.019G016500 ID=Potri.019G016500.1.v4.1 annot-version=v4.1 ATGCTGGTTCAATTCAAACTGGAACACCATTCGGAATTCGAGTCATACAGCCGACAAGTAGAAGAGTTGAAGGAAAATGTGAAGGACATGCTGATGGCAT CCAAAAAGGACCCAGTGGAACATATTGAATTCATTAATCTGTTATGTCGGCTTGGTGTGTCGTATCATTTTGACAAAGAGATTGAAAACAACCTCAAAGA AATTTTTGCTGACCTTCCTAATCTTCTTGAGAAGCATGACTTTGATCTCTACACTTTGTCACTTCTATTTCGAGTATTCAGACAGCATGGATTCAAAATG CCTTGCGTTGTGTTCGACAAGTTCAAGGACACCAAAGGAGAGTTTAAGGAAACAATCATCAACGATGTTAAAGGCATCCTGGGCTTGTATGAAGCTTCAT TTTTAAGTGTGCATGGAGAACAGGTACTGGATGAAGCCCTTGTTTTCACAAAGGCAAACCTGGAGTCTTCGGCTATGCAATCAAGCCCACGTCTAGCAGA CCATATTAGGAATGCTTTGATCCGGCCCTTTCACAAAGGCGTACCAAGAATAGAGGCTAGAAAATACATCTCTTTCTACGAAGAAGATGAGTCTCGGAAT GACACTCTACTCAAGTTTGCCAAGATAGATTTCAATCGAGTTCAGTTAATACATCGACAAGAGCTATCCATTCTCTCGAGGTGGTGGAATGATTTAAATT TTGCTGAGGAGTTTCCATATGCAAGAGATAGAATTGTAGAGATCTATTTCTGGGCAAATGGAGTCCATTTCGAGCCTCAATATGCTTTCTCTCGGATGAT GGTCACGAAATATATGAAAATTGTATCACTGGTAGATGATACATACGATGCATATGCATCTTTTGAAGAGATACAACATTTTTCTAATGCAATTGAAAGA TGCAGCATGAATGCTATTGATCAACTACCTGCCGATTACATGAAAGTTCTTTATAGGGCTCTTCTGAGTCTTTTCAACGACACTGAGAATGATATGGGAA AGCAAGGAAGATCCTATGCCTCATATTATTTGAAGGAGGAATTCAAAGAATTGGTGAGAGGCTACCATGCGGAGGCGGAGTGGGCAGATAAATGCCATGT CCCAACATTCGACGAGTATGTGCGCAATGGATTAGCCACAAGTGGTTATGGGGTAATTATGGCAGCATCCTTCCTTGGAATGGAAGAAGTTGCAGGAGGG GAGGAGTATGAATGGCTAAAAAGTAATCCAAAAATTATTAAAGCTGGGAAGATGATCGGTCGTTTGATGAATGACATAGTGGGCCACGAGGATGAACAAA AGAGAGGAGACTGTGCATCCGGCGTTGAATGCTATATGAAACAATATGATGTATCGGAGAAGAAAGCAATTGAAGAGATACAAAAGATGGACGTTAATGC GTGGAAGGATATCAATGAAGATTGCATGAGGCCAACTAATGCTCCAATGCTTCTCCTTCAACATTTTGTTAACCTTGTTCGAGTTACAGATGTTATTTAT GAGAATGATGACGATTCCTACACAATTCCATTAGGTTTAAAAGATTATGTCGCTTTATTATATATTGAGCAACTGCCTCTGTATGAATAA
AA sequence Show only first row Show all	>Potri.019G016500.1 pacid=42774629 polypeptide=Potri.019G016500.1.p locus=Potri.019G016500 ID=Potri.019G016500.1.v4.1 annot-version=v4.1 MLVQFKLEHHSEFESYSRQVEELKENVKDMLMASKKDPVEHIEFINLLCRLGVSYHFDKEIENNLKEIFADLPNLLEKHDFDLYTLSLLFRVFRQHGFKM PCVVFDKFKDTKGEFKETIINDVKGILGLYEASFLSVHGEQVLDEALVFTKANLESSAMQSSPRLADHIRNALIRPFHKGVPRIEARKYISFYEEDESRN DTLLKFAKIDFNRVQLIHRQELSILSRWWNDLNFAEEFPYARDRIVEIYFWANGVHFEPQYAFSRMMVTKYMKIVSLVDDTYDAYASFEEIQHFSNAIER CSMNAIDQLPADYMKVLYRALLSLFNDTENDMGKQGRSYASYYLKEEFKELVRGYHAEAEWADKCHVPTFDEYVRNGLATSGYGVIMAASFLGMEEVAGG EEYEWLKSNPKIIKAGKMIGRLMNDIVGHEDEQKRGDCASGVECYMKQYDVSEKKAIEEIQKMDVNAWKDINEDCMRPTNAPMLLLQHFVNLVRVTDVIY ENDDDSYTIPLGLKDYVALLYIEQLPLYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016500 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G016400 [exp]	1.00	0.8628
					Potri.007G042350 [exp]	2.00	0.8382
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G051300 [exp]	2.44	0.8342
AT3G11310			unknown protein		Potri.014G056100 [exp]	5.29	0.7221
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	17.29	0.7257
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	21.42	0.7475
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084100 [exp]	21.79	0.6994
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Potri.006G066400 [exp]	22.58	0.7209
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G441801 [exp]	27.49	0.6940
AT2G21180			unknown protein		Potri.004G167700 [exp]	28.14	0.7067

Compare expression of checked genes

Potri.019G016500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.