Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08640 342 / 2e-118 CJD1 Chloroplast J-like domain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G046200 [exp] 475 / 3e-171 AT1G08640 358 / 5e-125 Chloroplast J-like domain 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022022 [exp] 355 / 1e-123 AT1G08640 345 / 1e-119 Chloroplast J-like domain 1 (.1) Lus10042564 [exp] 336 / 2e-115 AT1G08640 308 / 5e-104 Chloroplast J-like domain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [poplar] [flax] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Potri.019G018300.1 pacid=42773516 polypeptide=Potri.019G018300.1.p locus=Potri.019G018300 ID=Potri.019G018300.1.v4.1 annot-version=v4.1 ATGGCTTTAGCGATTTCAAATGTCCTTAACTGCCCTAAACCCCAAATTTCCCTGAGGAATTACACTCTCAAGAGCTCAGTCTTGAAATCCCCAACTTCCT TTATCATATTTCCTAGAGCGGTAAGGGAGCATAAAAGTTTTGTTTGTGCTTCTGCATCAGCGGCAGGAGGTTCTGGGTCAGATAATGATTTAAACCCATA TGAGGTTCTTGGTGTGAATCCCATTGAGGGGTTTGATAAGGTCAAGGCAGCTTATGAAAAAAAGCGCAAGGAGGCCGAGAAACAGGGTGATGAAGCAGCT GCTGCTCAACTAGAGAAGGCATATGATAAATTGATGATGGCTCAGTTAAGTAATCGGAAGAAGGGTGTGACATATGGTTCATTCAAGGTTGCCAAGGACA TAAAATATGCTGATAAGCAGCCAGTTGTACCATGGGGACCAAGGTTTGCCAAGTCCAGTGAAAATGACATGCGGATTAACTTGGCAATATCTGCTGCATT TACAGCTTGGATTCTTATCAAACGCAATGCTGAGTATAAACCTCTTCAGTTTTTGGCTTTTGCATTTGTATATCGAATTTTTGAGAAGTTAAAAACCTTT GAACCTCCTGTATCACCGACATATTCAGAAGATGGTGAAGATGAGGGGCGAACACTGCGGTTGGGAAAACGGATACTTCGTGCTCTTGCACTAGTTTTTG GCTCTATCACTTTTGCCTCCTTGGCATACACTGGTATTTTGAATTTGATTGAGATGGCTGGCAGTTACATACCTGCTTTTCTTTACAATAATCAGGAACT GCTAATCACCACTGCTACATCAGCCATTCTCTACATCCTGGCATCATATTATCGGTAA
AA sequence Show only first row Show all	>Potri.019G018300.1 pacid=42773516 polypeptide=Potri.019G018300.1.p locus=Potri.019G018300 ID=Potri.019G018300.1.v4.1 annot-version=v4.1 MALAISNVLNCPKPQISLRNYTLKSSVLKSPTSFIIFPRAVREHKSFVCASASAAGGSGSDNDLNPYEVLGVNPIEGFDKVKAAYEKKRKEAEKQGDEAA AAQLEKAYDKLMMAQLSNRKKGVTYGSFKVAKDIKYADKQPVVPWGPRFAKSSENDMRINLAISAAFTAWILIKRNAEYKPLQFLAFAFVYRIFEKLKTF EPPVSPTYSEDGEDEGRTLRLGKRILRALALVFGSITFASLAYTGILNLIEMAGSYIPAFLYNNQELLITTATSAILYILASYYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Potri.019G018300 [exp]	0	1
ATCG01130		ATCG01130.1, YC...	Ycf1 protein (.1)		Potri.013G075166 [exp]	11.66	0.8407
					Potri.005G150475 [exp]	16.67	0.8365
ATCG01000		ATCG01000.1, YC...	Ycf1 protein (.1)		Potri.011G073900 [exp]	18.22	0.8348
AT4G25390			Protein kinase superfamily pro...		Potri.012G131900 [exp]	28.07	0.6639
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Potri.001G148000 [exp]	38.15	0.6598	CXIP4.1
ATCG01130		ATCG01130.1, YC...	Ycf1 protein (.1)		Potri.010G052900 [exp]	39.39	0.8282
AT5G08450			unknown protein		Potri.018G145542 [exp]	41.66	0.8200
					Potri.014G186308 [exp]	47.24	0.8167
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G136466 [exp]	48.40	0.8230
AT2G32910			DCD (Development and Cell Deat...		Potri.013G029200 [exp]	56.24	0.6533

Compare expression of checked genes

Potri.019G018300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.