Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09770 1167 / 0 MYB ATCDC5, AtMYBCDC5 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) AT5G02320 76 / 7e-14 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11510 75 / 2e-13 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G18100 74 / 4e-13 MYB ATMYB4R1 myb domain protein 4r1 (.1.2.3) AT4G33450 69 / 1e-12 MYB ATMYB69 myb domain protein 69 (.1) AT3G09370 71 / 3e-12 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G40360 70 / 3e-12 MYB ATMYB115 myb domain protein 115 (.1) AT1G17950 68 / 3e-12 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT2G02820 70 / 4e-12 MYB ATMYB88 myb domain protein 88 (.1.2) AT5G67300 67 / 1e-11 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G046300 [exp] 1693 / 0 AT1G09770 1131 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Potri.006G085600 [exp] 80 / 5e-15 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.018G038000 [exp] 76 / 1e-13 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.012G039400 [exp] 70 / 6e-13 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.008G148400 [exp] 72 / 1e-12 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.015G033600 [exp] 69 / 1e-12 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.006G241700 [exp] 72 / 2e-12 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.017G017600 [exp] 69 / 2e-12 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.015G041500 [exp] 71 / 4e-12 AT3G18100 627 / 0.0 myb domain protein 4r1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034133 [exp] 1321 / 0 AT1G09770 1207 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Lus10043452 [exp] 727 / 0 AT1G09770 641 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Lus10043451 [exp] 445 / 1e-149 AT1G09770 444 / 8e-152 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Lus10031326 [exp] 72 / 3e-13 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10031900 [exp] 72 / 6e-13 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10042561 [exp] 69 / 6e-13 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10024394 [exp] 72 / 1e-12 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10025351 [exp] 72 / 1e-12 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10011687 [exp] 72 / 2e-12 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10028638 [exp] 69 / 4e-12 AT1G17950 206 / 7e-66 myb domain protein 52 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11831 [poplar] [flax] Myb_Cef pre-mRNA splicing factor component
Representative CDS sequence Show only first row Show all	>Potri.019G018400.2 pacid=42774450 polypeptide=Potri.019G018400.2.p locus=Potri.019G018400 ID=Potri.019G018400.2.v4.1 annot-version=v4.1 ATGAGGATCATGATAAAGGGTGGAGTGTGGAAGAACACGGAGGATGAAATACTAAAAGCGGCGGTTATGAAATATGGAAAGAATCAGTGGGCTCGTATTT CTTCTCTTCTTGTTCGTAAATCTGCTAAGCAATGTAAAGCTCGTTGGTATGAGTGGCTTGACCCTTCCATTAAAAAGACTGAGTGGACTAGAGAGGAGGA TGAGAAATTACTACATCTTGCTAAGCTCATGCCCACTCAGTGGAGGACGATTGCACCTATTGTTGGACGGACTCCATCGCAGTGCCTTGAGCGTTACGAG AAGCTGCTTGATGCAGCTTGTGTTAAGGATGACAACTATGATCCTGGTGATGATCCACGGAAATTGCGCCCTGGTGAGATTGATCCAAATCCGGAATCTA AGCCTGCACGTCCAGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGCTCTCGGAAGCACGAGCTAGGTTAGCAAATACTAAAGGTAAAAAGGCTAA AAGAAAGGCTAGGGAGAAACAGCTTGAAGAAGCTAGGAGGCTTGCTTCCTTGCAGAAAAGGAGGGAACTGAAGGCTGCTGGTATTGATAATAGGCATCGA AAGAGGAAAAGAAAGGGTATAGACTATAATTCTGAAATCCCCTTTGAGAAAAGACCTCCTCCTGGATTTTATGACGTTGCTGATGAAGATAGACCTGTGG AACAACCTAAGTTCCCAACCACCATTGAAGAACTTGAGGGGAAAAAAAGGATGGACATCGAAGCACAGTTAAGAAAGCAAGACATGGCAAAGAATAAAAT TGCTGAAAGGCAAGATGCCCCATCAGCTATACTGCAAGCAAACAAGCTGAATGATCCGGAAACAGTAAGGAAGAGGTCAAAATTGATGCTTCCTGCACCA CAGATTTCAGATCATGAATTGGAGGATATTGCAAAGATGGGGTATGCTAGTGATCTTCTTGCAGGAAGTGAGGAACTCACAGAAGGGAGCGGTGCAACAC GTGCTCTTTTAGCAAACTATGCCCAAACACCACGCCAAGGAATGACACCGCTACGAACCCCTCAAAGAACTCCTGCTGGCAAGGGTGATGCTATAATGAT GGAAGCTGAAAACCTAGCACGGTTGAGGGAGTCGCAAACACCATTGCTAGGGGGAGAGAATCCAGAGTTGCACCCTTCAGATTTTTCTGGTGTTACTCCT AAGAAACGGGAGATTCAAACACCAAACCCAATGCTGACTCCTTCTGCAACTCCTGGCGGTGTTGCTCTTACGCCCAGAATTGGTATGACACCGTCAAGGG ATTCTTTTGGGATGACCCCAAAAGGAACTCCCATCAGGGATGAACTCCATATAAATGAAGATATGGATATGCATGATAGTGCAAAACTTGAGCAACGAAG ACAGGCTGATCTGAGAAGGAATTTGATTTCTGGTCTTGGTAATCTTCCACAGCCGAAGAATGAATACCAGATAGTCATTCAACCGCCTCCTGAGGAAAAT GAAGAACCAGAAGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCCAGGGCAAAAGCTGAGGAAGAAGCTCGGCAGCAGGCATTACTTCGGAAGAGAT CAAAAGTACTGCAGAGGGAACTCCCTCGGCCTCCTGCTGCTTCTTTGGAATTAATTAGAGATTCTTTGCTGAGAGCTGATGGGGATAAGAGTTCCTTTGT TCCTCCTACATCAATTGAACAGGCTGATGAAATGATAAGGAAGGAGCTTCTAGCCTTACTAGAACATGATAATGCAAAGTATCCACTTGAAGAGAAGCCA AGCAAGGAGAAAAAGAAAGGCTCCAAGCACCCTTCAAACAGATCTTCTGCTTCTATCCCTGTGATAGAGGACTTTGAAGAAGATGAGCTGAAACAAGCTG ATAATTTGATAAAAGTGGAAGCTCAGTACATACGTGTAGCTATGGGCCATGAAGATGAATCCCTTGATGAATTTATTGAAGCACACAAAACATGTATAAA TGACCTCATGTACTTCCCCACTCGCAACGCTTATGGTCTCTCCAGTGTTGCTGGAAATATGGAGAAACTCACAGCATTGCAGAATGAATTTGAGAATGTG AAAACAAGGTTAGAGGCTGAAAGGGAGAAGGCATTACGGCTCGAGAAGAAGGTTAATGTTCTCACACAAGGTTATCAGATGCGGGCAGAAAGGCAGCTTT TGCCACCAATTGAGTTGACCTTAAAGCAGATGGACACCTCTGGAACAGAACTAGAGTGCTTCCAAGCTTTGCAGAGGCAAGAGCAATTAGCAGCATCACA CAGGATCAATGGTCTTTGGGAGGAAGTTCAGAAGCAAAAGGAGCTAGAGCAAACTATGCAAAGGAGATATGGGGATCTTGTGGCTGAGCTGGAAAGGATA CAACAGCTCATCATTAATTACAGAGCACTAGCAATACAACAAGAAGAAATTGCTGCAAAGAATCGTGCACTTGAGTTGGCAGAAGCTGCAACAAAGCAAG CTGCCATACTGAACTCTGAACCTTTTGAACCTGTGACTCCAGATGAACATGGAAATTCTATGCCAGTTGGTTCATTTGACAAGAAAGTTTTAGAGCAGCA AATGGATGTTGATTCAGAGAAGGTGCACAGTGCACTGGCCACGGATACAAGCTTAACCAATAATGTGCCTTCTGATGAGGGGCAGATGACACTTGTACAA GGTAATGGCCATGAAGCTTCTGGTGCTAATCCCTCGAGTCCAGATGGAAATAACCAAAATGGAGTTCCAGTTCTGACAGAGAACTCAATAAACAGAGGAG ATATTATATCTACTGTTGGTGTTGCAGTGGAGATTAAGGTGAATGATGCTTCTGTTGATGGGGATGCTGGTGATGTTATGAGCACAGAAATTATGGATGG CTTAGCTTCTGTTGAAGGAGAGAGTATCCAAGAAAGAGCTGATGACTTTGACAAAGCTGATATGATGGAGGTTTCCAGTGGCGGGGATGATAAAGTAAAT CAAAAGAAGGATGAGGGAAAATTGCCTGTCATTTATGTGGATCTTACTAACTCTGATTAG
AA sequence Show only first row Show all	>Potri.019G018400.2 pacid=42774450 polypeptide=Potri.019G018400.2.p locus=Potri.019G018400 ID=Potri.019G018400.2.v4.1 annot-version=v4.1 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYE KLLDAACVKDDNYDPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHR KRKRKGIDYNSEIPFEKRPPPGFYDVADEDRPVEQPKFPTTIEELEGKKRMDIEAQLRKQDMAKNKIAERQDAPSAILQANKLNDPETVRKRSKLMLPAP QISDHELEDIAKMGYASDLLAGSEELTEGSGATRALLANYAQTPRQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTP KKREIQTPNPMLTPSATPGGVALTPRIGMTPSRDSFGMTPKGTPIRDELHINEDMDMHDSAKLEQRRQADLRRNLISGLGNLPQPKNEYQIVIQPPPEEN EEPEEKIEEDMSDRIARAKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRDSLLRADGDKSSFVPPTSIEQADEMIRKELLALLEHDNAKYPLEEKP SKEKKKGSKHPSNRSSASIPVIEDFEEDELKQADNLIKVEAQYIRVAMGHEDESLDEFIEAHKTCINDLMYFPTRNAYGLSSVAGNMEKLTALQNEFENV KTRLEAEREKALRLEKKVNVLTQGYQMRAERQLLPPIELTLKQMDTSGTELECFQALQRQEQLAASHRINGLWEEVQKQKELEQTMQRRYGDLVAELERI QQLIINYRALAIQQEEIAAKNRALELAEAATKQAAILNSEPFEPVTPDEHGNSMPVGSFDKKVLEQQMDVDSEKVHSALATDTSLTNNVPSDEGQMTLVQ GNGHEASGANPSSPDGNNQNGVPVLTENSINRGDIISTVGVAVEIKVNDASVDGDAGDVMSTEIMDGLASVEGESIQERADDFDKADMMEVSSGGDDKVN QKKDEGKLPVIYVDLTNSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018400 [exp]	0	1
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.001G215700 [exp]	1.73	0.8171
AT5G35910			Polynucleotidyl transferase, r...		Potri.019G038701 [exp]	5.47	0.8206
AT5G28740			Tetratricopeptide repeat (TPR)...		Potri.004G035600 [exp]	7.74	0.7781
AT4G21660			proline-rich spliceosome-assoc...		Potri.011G047600 [exp]	9.21	0.7423
AT5G63550			DEK domain-containing chromati...		Potri.015G100700 [exp]	11.66	0.7665
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	11.83	0.7745
AT1G34320			Protein of unknown function (D...		Potri.019G085900 [exp]	14.49	0.7724
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.015G133400 [exp]	18.38	0.7246	PRH75.2
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049700 [exp]	18.97	0.7080
AT5G66540			unknown protein		Potri.015G078500 [exp]	20.19	0.7255

Compare expression of checked genes

Potri.019G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.