Plant FIBer expression Database

Potri.019G018500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08630 538 / 0 THA1 threonine aldolase 1 (.1.2.3.4.5)
AT3G04520 527 / 0 THA2 threonine aldolase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G046400
[exp]
628 / 0 AT1G08630 524 / 0.0 threonine aldolase 1 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000556
[exp]
559 / 0 AT1G08630 536 / 0.0 threonine aldolase 1 (.1.2.3.4.5)
Lus10014658
[exp]
558 / 0 AT1G08630 534 / 0.0 threonine aldolase 1 (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF01212 Beta_elim_lyase Beta-eliminating lyase
Representative CDS sequence
>Potri.019G018500.4 pacid=42773374 polypeptide=Potri.019G018500.4.p locus=Potri.019G018500 ID=Potri.019G018500.4.v4.1 annot-version=v4.1
ATGGTGACTAGAACAGTGGATCTCCGGTCTGACACTGTCACGAAACCAACTGAAGCAATGAGGGCTGCTATGGCAAATGCTGAGGTTGATGATGATGTCT
TGAGTTATGATCCCAGTGCGTTACGGTTAGAAACTGAAATGGCAAAAGTCACTGGCAAGGAGGCAGCTCTATTTGTTCCATCAGGCACCATGGGTAACCT
TGTTAGTGTTCTTGTGCATTGCAACATTAGGGGAAGTGAGGTAATACTTGGAAATAACTCTCATATCCATATTTATGAGAATGGAGGCATCTCAACAATT
GGAGGCGTTCATCCTCGGACTGTGAAGAATAACGATGATGGAACAATGGATATTGATTTAATTGAAGCTGCAATTAGAGATCCTAGAGGGGAGATTGTGT
ATCCAACTACTAGGCTCATCTGTTTGGAGAATACACAAGCCAACTGCGGTGGTAGATGCTTGTCTGTAGAATATACAGACAAAGTTGGAGAATTAGCTAA
AAAGCATGGTTTGAAGCTTCACATGGATGGGGCTCGCATTTTTAATGCATCTATAGCACTCGGAGTTCCAGTTCACAGGCTTTTACAAGCTGCAGATTCA
GCTTCGGTGTGTCTATCAAAAGGTTTAGGTGCACCTGTTGGCTCTGTTATTGTTGGTTCCAAAAGTTTTATTGCCAAGGCTAGAATCCTGAGGAAAACCT
TAGGAGGTGGAATGAGACAAGTTGGTGTCCTTTGTGCTGCTGCTTTAGTTGCTCTTCACGAGACTGTTCTAAAGCTTGAGGATGATCACAAGAAAACTAA
GATGCTAGCAGAGGGGCTGAATCAAATTAAAGGACTAAGGCTGAACGTTGCTGCTGTTGAGACCAATATTATATTTTTTGACGTAGTAGAGGGAGCAAAA
ATCACAGCAGAAAAGCTGTGCAAGAACTTGGAACAGCATGGTATACTTGTAATGCAAGAGAGCCCAGTCAGGATTAGGGTTGTCCTTCACCACCAGATTT
CAGAGAGTGATGTGCAGTACGCACTCTCCTGCTTTAAGCAAGCTTTGACTGGGAGGGTGCAGGAAGAAAATGGCAACTAG
AA sequence
>Potri.019G018500.4 pacid=42773374 polypeptide=Potri.019G018500.4.p locus=Potri.019G018500 ID=Potri.019G018500.4.v4.1 annot-version=v4.1
MVTRTVDLRSDTVTKPTEAMRAAMANAEVDDDVLSYDPSALRLETEMAKVTGKEAALFVPSGTMGNLVSVLVHCNIRGSEVILGNNSHIHIYENGGISTI
GGVHPRTVKNNDDGTMDIDLIEAAIRDPRGEIVYPTTRLICLENTQANCGGRCLSVEYTDKVGELAKKHGLKLHMDGARIFNASIALGVPVHRLLQAADS
ASVCLSKGLGAPVGSVIVGSKSFIAKARILRKTLGGGMRQVGVLCAAALVALHETVLKLEDDHKKTKMLAEGLNQIKGLRLNVAAVETNIIFFDVVEGAK
ITAEKLCKNLEQHGILVMQESPVRIRVVLHHQISESDVQYALSCFKQALTGRVQEENGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08630 THA1 threonine aldolase 1 (.1.2.3.4... Potri.019G018500
[exp]
0 1
AT5G04590 SIR sulfite reductase (.1) Potri.001G257000
[exp]
1.00 0.8776 Pt-SIR.2
AT2G05710 ACO3 aconitase 3 (.1) Potri.002G229200
[exp]
7.74 0.7548
AT1G08680 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-lik... Potri.013G068300
[exp]
7.93 0.7636 ZIGA4.1
AT5G17380 Thiamine pyrophosphate depende... Potri.004G094600
[exp]
8.66 0.7463
AT5G15870 glycosyl hydrolase family 81 p... Potri.004G105300
[exp]
9.79 0.7965
AT1G53900 Eukaryotic translation initiat... Potri.001G163300
[exp]
12.00 0.7398
AT5G64250 Aldolase-type TIM barrel famil... Potri.017G051800
[exp]
15.49 0.7246
AT4G23100 ATECS1, CAD2, G... ROOT MERISTEMLESS 1, PHYTOALEX... Potri.003G126900
[exp]
18.13 0.7385
AT1G21460 SWEET1, AtSWEET... Nodulin MtN3 family protein (.... Potri.005G187300
[exp]
20.59 0.6737
AT5G19380 CLT1 CRT (chloroquine-resistance tr... Potri.009G069400
[exp]
27.71 0.7198

Potri.019G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.