Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08620 1261 / 0 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT4G20400 615 / 0 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 614 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 593 / 0 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT2G38950 446 / 4e-141 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G63490 304 / 6e-86 transcription factor jumonji (jmjC) domain-containing protein (.1) AT5G46910 218 / 5e-59 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT3G48430 168 / 8e-42 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT5G04240 158 / 8e-39 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT1G05830 44 / 0.001 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G046700 [exp] 2150 / 0 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.002G037300 [exp] 695 / 0 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.011G155100 [exp] 638 / 0 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.001G440900 [exp] 629 / 0 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.003G126600 [exp] 334 / 3e-94 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.003G096100 [exp] 222 / 9e-60 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 213 / 9e-57 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.012G092400 [exp] 195 / 5e-50 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.015G089000 [exp] 191 / 8e-49 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022024 [exp] 1055 / 0 AT3G04490 1370 / 0.0 unknown protein Lus10042566 [exp] 1006 / 0 AT3G04490 1382 / 0.0 unknown protein Lus10008063 [exp] 639 / 0 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10033903 [exp] 582 / 0 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10003548 [exp] 468 / 4e-146 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10008495 [exp] 327 / 1e-91 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10035385 [exp] 229 / 3e-62 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10030988 [exp] 228 / 7e-62 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10008531 [exp] 219 / 2e-57 AT1G63490 796 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10019482 [exp] 177 / 2e-44 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF02373 [poplar] [flax] JmjC JmjC domain, hydroxylase CL0029 [poplar] [flax] Cupin PF02375 [poplar] [flax] JmjN jmjN domain CL0029 [poplar] [flax] PF02928 [poplar] [flax] zf-C5HC2 C5HC2 zinc finger CL0029 [poplar] [flax] PF05964 [poplar] [flax] FYRN F/Y-rich N-terminus CL0029 [poplar] [flax] PF05965 [poplar] [flax] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Potri.019G018700.3 pacid=42773047 polypeptide=Potri.019G018700.3.p locus=Potri.019G018700 ID=Potri.019G018700.3.v4.1 annot-version=v4.1 ATGATGGGAACTGAACTCATTAGAGTTCGTGTTAAGGAGGAGAATGATGATATCCCATCAGTTCCACCTGGTTTTGAGTCATTTGCAGCTTTCAACTTGA ACAGGGTGCAAGATGGTGAAAAACAAGAAAGTAATATAATCAGTTGTTCAGCCACTGCGAGCGCTTCTGAATCATTGCCGGTCAAGATGGAGACGGGGTT TGAGGATGAAGCAAAAGTTACAAGGTCCCTCCGGCGTAGACCCTGGATAAAGTATGGACATTTGGATGGCTGTTCAGAGGACGAGTCTGATTCTGCGAAG CCTAATCAAAATCTCTCCTCGAGGTCTCAACTTCCCAAGGGAGTGATCCGTGGATGTCCACAATGCAGTAATTGCCAAAAGGTCAGTGCAAGATGGCAAC CAGAATATGCTCGCAAGCCTGACATTGAGGATGCTCCTGTATTCTACCCAACTGAAGAGGAGTTTGAAGATACATTGAAATATATTGCTAGTATACGACC TAAAGCTGAACAATATGGAATCTGTCGCATTGTTCCTCCTCCTTCTTGGAAACCTCCCTGTCCTCTTAAGGAAGAAACTGTTTGGGAGGGCTCTACATTT GCAACTCGTGTCCAGAGGGTTGACAAACTGCAGAACCGGGATTCTATGAGAAAGATGTCAACGATGTCTAACCATACCAGGAAGAAAAGGAGAAGATGCA TGAGGATGGCAATAGATTGTGGGGCAGATATTGGAAGTATCTCAAGGTCTAATGATACTGGTGTTTGTGAAGCTGAGAGTTTTGGGTTTGAACCCGGTCC TCTGTTTACTTTGGATAAATTTCAGAAATATGCTGATGATTTCATGGCCCAGTACTTCAAGAAGGATGAGAATACTATTAATAAAGGAGGCAGCATGACA ATGCTTCAGGAGAACTGTGAACCAACATTGGATAATATTGAGGGTGAATATTGGCGAATTGTAGAGAAAGCAACTGAAGAAATTGAGGTCCTATATGGAG CTGATCTGGAAACAGGGGTTTTTGGCAGTGGATTTCCAAAAACATCCAGTGAAGTTGGTTCTGCTACAAATGATCGTTATACAAAATCAGGCTGGAACTT GAATAACTTTCCGAGGCTTCCTGGATCTGTTCTTTCCTTTGAAAGTGGTGATATATCTGGTGTTTTGGTGCCATGGCTGTATATAGGGATGTGCTTCTCC TCCTTCTGTTGGCATGTTGAAGATCATCACCTATATTCACTGAATTACATGCATTGGGGTGCGCAAAAAATATGGTATGGTGTCCCCGGGAAGGATGCCG TTAAATTGGAAGAGGCCATGAGAAAGTATTTACCTGATCTGTTTGAAGAACAACCTGATTTGCTCCACAAGCTGGTGACTCAGCTCTCCCCCAACATACT AAAATCTATAGGAGTGCCTGTCTATCGGTGTGTTCAGAATTCTGGAGAGTTTGTGCTAACCTTTCCTCGAGCATATCATTCGGGGTTTAATTGCGGTTTC AATTGTGCGGAGGCAGTGAATGTAGCTCCTGTTGACTGGTTGCCCCATGGACAGACTGCTATAGAGCTATACCGTAAGCAGGGACGGAGGACTTCCATCT CTCATGATAAATTGTTGCTTGGGGCAGCAAGGGAAGCGGTGAGAGCACATTGGGAACTGAATTTACTTAAGAGGAATGAATTGAATAACTTAAGATGGAA AGACATGTGTGGAAAAGATGGGATATTAGCAAAAGCATTCAAGGAACGTGTGGAGACAGAGCATGTGAGGAGACAATTTCTCTGCAATTCTTCCCCAGCA CTGAAGATGGAGAGTGATTTTGATGCCACAAGTGAGAGGGAATGCAGTGTTTGCCTTTTTGATTTGCACCTGTCTGCAGTGGGGTGTCATTGTTCTCCAG ACAAGTATGCATGCCTGAATCATGCAAAGCAGCTGTGTTCATGTGTTTCGGGTGCCAAATTTTTCCTGTTTCGCTATGACATCAGTGAATTAAATATCCT TGTGGAGGCTTTGGAAGGAAAATTGAGTGCGGTGTACCGATGGGCAAGACTGGATCTTGGACTTGCCCTGACTTCTTTTGTTTCCAAAGACAATGCTGAA GAAGGTAAATTATCATGTTCTCCAAAAAGAACTGCAACTGAACAGGTGAGATCACATGCGTCAGCAGATCTCCATAAAGTTTCACCGGGGAGAATAATAT CTGGTGACTTCAGAATGAATTCAGCTGGGATCTGTTGGCAGATCGCCGCAGAAGAGAAGAAACCACCTGAAGATATACCTCCAAAAGATGCAAGGGCATC ATCTGTATCTCATAGTTCTTTTCAAGTAATTGAGAAGGAAAATGACAATTTCAAGCTAAACCAGAAAGGTTCTAGTCTTTTGTCTACAAATTTAAGGACA CTAGCTTGCCAGTTGTCTCAAGAAGACCCATCCTATACTGCAGGCCTGGCTTCAGAGAAATGTGAAAGGAAGAAGCCTTCAACTTTGTGTAATGACAATA TTATTCTTCTTAGTGATGATGAAGGCGATGAACTGAAGCCAATTTCAGAAAGGGCAAAAGAAAATGTTTCTGTAAACCATTCCTCACTTTCAGAGAAGCT ATCAATTTCGCATGATAGGTCATGTAATGACAATAAAGATTCAATCTTAACTTTTGCTGTGATCAACGGAGCAGTAAAGAGTGAAAAGAATGTCAGTTTG TTTCCTGATGAAAACAATTCTCCATCTGGTCCTTTGCAAGTGAAGGATGGCTATAATCAAGATGGTGGAAAGGTTTTGGGATTTAATCAACCGAATGGCT TTTGCCATGCAGGTCCAAGCACTGCAGGTTTTGGTAGGAATATTCAGAACTTCTCATCTAATAGAGACGCCGGCAAGGATAACAGGATGGCAAATGCTGG GAGTCAGCAACCACAGCCATGTGGCAGTGGAAAGCCTAACATTGAGGATGAGATGGGAGCAAATGCCACCTCAACTTCAGTAGACAACTCAAGAACTATG GCTGGTAGCCCATCTTCCTCACAAAATAATTTGGACAGGTACTACCGCCAGAAGGGTCCCCGCATTGCCAAGGTAGTGCGAAGGATCAATTGTAATGTTG AACCTCTGGAATTTGGGGTTGTGCTTTCTGGGAAGTCATGGTGCAACAGCCAAGCAATCTTTCCGAAAGGGTTTAGAAGCCGAGTTAGGTACTTAAGCGT TTTAGATCCAACCAATATGTGTTACTATGTCTCAGAAATACTGGATGCAGGGCGAAATAGTCCTCTATTTATGGTTTCCTTGGAGCATTACCCAAATGAG GTATTTATTCATGTTTCAGCAGCCAGATGCTGGGAAATGGTGAGAGAGAGAGTGAATCAGGAGATCACAAAGCAGCATAAAACTGGAAGAACGAATCTTC CACCTTTACAACCTCCTGGAAGTCTTGATGGCTTCGAAATGTTTGGGTTTTCTTCACCAGCAATTGTCCAGGCTGTAGAAGCATTAGATAGAAATCGAGT TTGTACAGATTATTGGGACTCCAGGCCATATTCACGGCCGCAAGGACAGATTCCACAGCATTCTCAATCCAAAGCCAATGCAAGACATTCCCAGGGAACA TCTGAGGACCAAAATAACAGAAAAGTTCCTGGGAGCCAATTCTTACCTGTCGAAGTTGATACGACACTTGGGGGTTTATTCAAGAAGGCAAGCCCAGAAG AATTGATCTTGCTGAGTCGTGTTTTAAGTGACAATAAACCAACAGCTGATCCTGGTCTCATAACACAGCTTCTTAATGAAGAGATTCACAATCGTCCTAG ATGA
AA sequence Show only first row Show all	>Potri.019G018700.3 pacid=42773047 polypeptide=Potri.019G018700.3.p locus=Potri.019G018700 ID=Potri.019G018700.3.v4.1 annot-version=v4.1 MMGTELIRVRVKEENDDIPSVPPGFESFAAFNLNRVQDGEKQESNIISCSATASASESLPVKMETGFEDEAKVTRSLRRRPWIKYGHLDGCSEDESDSAK PNQNLSSRSQLPKGVIRGCPQCSNCQKVSARWQPEYARKPDIEDAPVFYPTEEEFEDTLKYIASIRPKAEQYGICRIVPPPSWKPPCPLKEETVWEGSTF ATRVQRVDKLQNRDSMRKMSTMSNHTRKKRRRCMRMAIDCGADIGSISRSNDTGVCEAESFGFEPGPLFTLDKFQKYADDFMAQYFKKDENTINKGGSMT MLQENCEPTLDNIEGEYWRIVEKATEEIEVLYGADLETGVFGSGFPKTSSEVGSATNDRYTKSGWNLNNFPRLPGSVLSFESGDISGVLVPWLYIGMCFS SFCWHVEDHHLYSLNYMHWGAQKIWYGVPGKDAVKLEEAMRKYLPDLFEEQPDLLHKLVTQLSPNILKSIGVPVYRCVQNSGEFVLTFPRAYHSGFNCGF NCAEAVNVAPVDWLPHGQTAIELYRKQGRRTSISHDKLLLGAAREAVRAHWELNLLKRNELNNLRWKDMCGKDGILAKAFKERVETEHVRRQFLCNSSPA LKMESDFDATSERECSVCLFDLHLSAVGCHCSPDKYACLNHAKQLCSCVSGAKFFLFRYDISELNILVEALEGKLSAVYRWARLDLGLALTSFVSKDNAE EGKLSCSPKRTATEQVRSHASADLHKVSPGRIISGDFRMNSAGICWQIAAEEKKPPEDIPPKDARASSVSHSSFQVIEKENDNFKLNQKGSSLLSTNLRT LACQLSQEDPSYTAGLASEKCERKKPSTLCNDNIILLSDDEGDELKPISERAKENVSVNHSSLSEKLSISHDRSCNDNKDSILTFAVINGAVKSEKNVSL FPDENNSPSGPLQVKDGYNQDGGKVLGFNQPNGFCHAGPSTAGFGRNIQNFSSNRDAGKDNRMANAGSQQPQPCGSGKPNIEDEMGANATSTSVDNSRTM AGSPSSSQNNLDRYYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCNSQAIFPKGFRSRVRYLSVLDPTNMCYYVSEILDAGRNSPLFMVSLEHYPNE VFIHVSAARCWEMVRERVNQEITKQHKTGRTNLPPLQPPGSLDGFEMFGFSSPAIVQAVEALDRNRVCTDYWDSRPYSRPQGQIPQHSQSKANARHSQGT SEDQNNRKVPGSQFLPVEVDTTLGGLFKKASPEELILLSRVLSDNKPTADPGLITQLLNEEIHNRPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.019G018700 [exp]	0	1
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	1.41	0.9150
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	1.41	0.9059
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	3.87	0.9033
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	4.47	0.9018
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124000 [exp]	6.92	0.8804
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	7.41	0.8928
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	8.83	0.8908
AT3G45830			unknown protein		Potri.009G026100 [exp]	10.58	0.8898
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	10.58	0.8900
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	12.24	0.8857

Compare expression of checked genes

Potri.019G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.