Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04490 1450 / 0 unknown protein AT4G38092 122 / 2e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042566 [exp] 1559 / 0 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 1553 / 0 AT3G04490 1370 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G019100.2 pacid=42773605 polypeptide=Potri.019G019100.2.p locus=Potri.019G019100 ID=Potri.019G019100.2.v4.1 annot-version=v4.1 ATGATGCAGCAGCAACAGCAGACAGGGGACGGCATCGCCGATCTGGCGCAACTCCAGTCCACCATGCACGCCATTGAGCTCGCCTGCTCTTCTATCCAGA TGCATATAAATCCAGCGGCAGCTGAGGCGACCATTCTGTCGCTAAATCAGTCGCCTCAGCCTTACAAGGCATGTCAATTTATTCTTGGGAATTCTCAAAT GGGAATGGCAAAGTTTCAAGCGGCAGCTGCGATTCGCGATGCAGCTATTAGGGAATGGAGTCTCCTTACGAGTGATGATAAGAGAAGCTTGATAAGTTTC TGTTTGTGCTATGTTATGCAACATGCTGGTTCGCCAGAGGGCTATGTCCTAGCAAAGGTTTCTTCTGTGGCTGCTCAATTGATGAAAAGGGGCTGGATCG ATTTTACAGCTGCTGAGAAGGAGACCTTTTTTTATCAGATAAACCAGGCTATTCTTGGCATTCATGGTGTAGATGTGCAGTTCTCTGGAGTCAATTTTCT AGAATCTTTGGTATCAGAATTCTCACCTTCTACTTCAACTGCCATGGGCCTTCCCAGGGAATTTCATGAGCAATGCCGTATGTTGTTAGAAAAAGACTAT GTCAAGACATTCTATTGCTGGGCACAAAATGCTGCTGCAAGTGTCACAAGGAGAATAACTGACTCCAATACTGAAGTACCCGAGGTTAAGGTTTGTACTG CCGCACTGCGTCTCATGCTTCAAATCCTGAACTGGGATTTCCGGTACAACACAACTGGCACAAAAGGTGGAAGAAATGCCTTTTTACCTGGAGTTAGAGG CCACAGTTCACCCAAGAAGTCTGACTGCACCATAGTGCAGCCAGGTCCTGCATGGCGTGATGTTCTGATTTCAAGTGGCCATGTTGGGTGGCTCCTGGGT TTATATGCAACTCTAAGGGAGAAGTTTTCTCGTGGTGGCTACTGGCTTGATTGTCCTCTTGCAGTCTCTGCTCGAAAACTTATCATACAGTTCTGCTCCT TGACAGGAACTATATTCCTCTCTGATGATGGACAAATGCAAGAGCATCATTTGCTACAACTGCTTTCTGGGATAATTCAGTGGATTGATCCTCCTGATGC TGTTTCACAAGCAATTGAAGATGGGAAAAGTGAAAGTGAGTTGCTTGATGGATGCCGTGCACTTTTATCTATTGCAACTGTCACAAACCCTATTGTGTTA GACAATCTGTTAAAATCCATAAGGCCCTTTGGCACTCTTGCCTTTTTATCCACCTTGATGTGTCAAGTTATCAAAGTCCTTTTGACTAAAAACTGTGAGG AGGGGACATGGAGCTGGGAGGCACGTGATATCCTGCTAGATACCTGGACCACCTTACTTGTGGATAGTACTGGTGGGACAGAGTTGCTTCCACCTGAAGG GATCAATGCTGCAGCCAACCTTTTTGCCTTGATTGTAGACTCTGAGCTAAGAGTGGCTTCTACATCAGCGATGAGTGGTGATGATGACGATGACCTGTAC TACCTTCAAGCATCTATTACTGCCATGGATGAGAGGTTAAATTCTTATGCGTTTATTGCAAGAGCAGCAATTGATGTTGCAATTCCTTTGCTCACGAGGC TGTTTTCGGAGCGCTTTGCCGCATTGCATCAGGGCAGGGGTATTGTTGATCCAACTCCAACTTTGGAGGAACTTTACTCGTTGTTGTTAATAACTGGGCA TGTACTTGCAGATGAAGGAGAGGGAGAAACACCCCTGGTGCCTAACACAATACAGACTCATTTTCTGGACACGGTGGAAGCAGATAAGCATCCTGTTGTG GTACTCTCCATTTCAATAATAAATTTTGCCCAGCAAAGTTTAGATCCAGAAATGAGAGCTTCGGTTTTCAGTCCCCGGCTCATGGAGGCTGTTATATGGT TTCTTGCAAGATGGTCTCGTACATATCTTTTGTCAGAAGAAATTAGAGACAGCACCCTCAATTCAGGGTATCAGCAGCAGCAGCAACACTCCAGAAAAGC TTTGCTCAGCTTTTTTGGAGAAACTTATCAGGGAAAATTTGTGCTTGACATTATTGTTCGTATCTCAGTGACAACTCTCTTGTCTTATCCTGGGGAGAAG GATTTGCAGGAGTTAACTTGTTCCAAACTACTCCATGCTCTTGTTCGGCGAAAAAATATTTGTGGTCAACTTGTTCAACTGGGCTCATGGCGTGAACTAG CAAATGCATTTGCAAATGAACAAACTTTTTTCGTGTTAAATTCTTCTAATCAGCGTTCACTGGCTCAAACACTGGTTCTTTCTGCTTCTGGAATGGGTAA TTCAGGAGCTTCAAATCAATACGTAAGGAACCTTATGGGTCATATGACAAAGTATCTGGTGGAACTATCTAACAAGAGGGACCTCAAAAATGTTGCTCAA CAACCAGATGTCATCCTACAAGTGAGTTGCTTGTTGGAGCGACTACGTGGAGCTGCCAGTGCCTCTGAACCTCGAACACAGAGAGCTCTTTATGAGATGG GACTCTCTGTGATGAACCCGATTTTGGTTCTTCTTGAAGTGTACAAACATGAGTCTGCAGTTGTTTATCTGCTACTTAAATTTGTTGTTGATTTGGTGGA TGGCCAAATTTCCTACCTGGAATCCCAAGAAACTGCTGTTGTTGTTGATTTCTGCATGCGTTTGCTTCAGCTTTACTCATCTCACAATATTGGCAAGATA TCATTGAGTCTTTCAAGTAGTTTGCTTAGTGAGGCAAAAACTGAGCAGTATAAAGATTTACGTGCTCTTCTTCAGCTTCTTTCAAGTCTTTGTTCAAAAG ATCTGGTTGACTTTTCATCAGATTCAGTTGAGACACCGGGGACAAATATATCTGAGGTGGTCTACTTCGGACTTCACATAGTTACCCCTCTGATCTCTTT GGAGTTGCTGAAGTACCCTAAGCTTTGCCATGATTACTTCTCGCTACTGTCGCATTTGTTGGAGGTGTATCCCGAAACAGTTGCCCAACTGAACAATGAA GCTTTTGGCCATGTGCTTGGGACCCTTGATTTTGGTCTTCGCCATCAGGACACGGAAGTAGTTAATATGTGCCTGAGCGCTCTGAAAGCTCTTGCTTGCT ACCACTATAAGGAGACAGGTGCTGGCAAAACAGGCTTGGGCTCACATGCCAGTGGTGTGGAAGATTCAAGTGGGAATACGCAGGAAGGCATTTTGAGTAG ATTCCTTCAGTTGTTAATGCAATTACTCCTTTTTGAGGATTACAGTCCGGATCTGGTTGGTCCTGCAGCGGATGCTCTGTTTCCGTTGATTCTTTGTGAA CAAGTTCTTTACCAGAAATTAGCCAAGGAGCTTATAGAGAGGCAAACAAATCCAACATTGAGATCAAGGATGGCAAGCGCATTGCAGTCCCTCACAAGTG CCAATCAGCTTTCATCCACTCTAGATCGCATGAATTACCAAAGATTCAGGAAGAACGTGAACAACTTTTTGATTGAAGTTCGAGGATTCCTGCGGACAAT CTGA
AA sequence Show only first row Show all	>Potri.019G019100.2 pacid=42773605 polypeptide=Potri.019G019100.2.p locus=Potri.019G019100 ID=Potri.019G019100.2.v4.1 annot-version=v4.1 MMQQQQQTGDGIADLAQLQSTMHAIELACSSIQMHINPAAAEATILSLNQSPQPYKACQFILGNSQMGMAKFQAAAAIRDAAIREWSLLTSDDKRSLISF CLCYVMQHAGSPEGYVLAKVSSVAAQLMKRGWIDFTAAEKETFFYQINQAILGIHGVDVQFSGVNFLESLVSEFSPSTSTAMGLPREFHEQCRMLLEKDY VKTFYCWAQNAAASVTRRITDSNTEVPEVKVCTAALRLMLQILNWDFRYNTTGTKGGRNAFLPGVRGHSSPKKSDCTIVQPGPAWRDVLISSGHVGWLLG LYATLREKFSRGGYWLDCPLAVSARKLIIQFCSLTGTIFLSDDGQMQEHHLLQLLSGIIQWIDPPDAVSQAIEDGKSESELLDGCRALLSIATVTNPIVL DNLLKSIRPFGTLAFLSTLMCQVIKVLLTKNCEEGTWSWEARDILLDTWTTLLVDSTGGTELLPPEGINAAANLFALIVDSELRVASTSAMSGDDDDDLY YLQASITAMDERLNSYAFIARAAIDVAIPLLTRLFSERFAALHQGRGIVDPTPTLEELYSLLLITGHVLADEGEGETPLVPNTIQTHFLDTVEADKHPVV VLSISIINFAQQSLDPEMRASVFSPRLMEAVIWFLARWSRTYLLSEEIRDSTLNSGYQQQQQHSRKALLSFFGETYQGKFVLDIIVRISVTTLLSYPGEK DLQELTCSKLLHALVRRKNICGQLVQLGSWRELANAFANEQTFFVLNSSNQRSLAQTLVLSASGMGNSGASNQYVRNLMGHMTKYLVELSNKRDLKNVAQ QPDVILQVSCLLERLRGAASASEPRTQRALYEMGLSVMNPILVLLEVYKHESAVVYLLLKFVVDLVDGQISYLESQETAVVVDFCMRLLQLYSSHNIGKI SLSLSSSLLSEAKTEQYKDLRALLQLLSSLCSKDLVDFSSDSVETPGTNISEVVYFGLHIVTPLISLELLKYPKLCHDYFSLLSHLLEVYPETVAQLNNE AFGHVLGTLDFGLRHQDTEVVNMCLSALKALACYHYKETGAGKTGLGSHASGVEDSSGNTQEGILSRFLQLLMQLLLFEDYSPDLVGPAADALFPLILCE QVLYQKLAKELIERQTNPTLRSRMASALQSLTSANQLSSTLDRMNYQRFRKNVNNFLIEVRGFLRTI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04490			unknown protein		Potri.019G019100 [exp]	0	1
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	3.00	0.8704	SCD1.2
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	3.16	0.8978	Pt-VPS33.2
AT5G58510			unknown protein		Potri.009G076000 [exp]	3.16	0.8645
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	3.46	0.8675
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	4.58	0.8437
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G031200 [exp]	4.58	0.8665
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	6.48	0.8573
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	7.07	0.8718
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	7.74	0.8290
AT2G02910			Protein of unknown function (D...		Potri.010G094000 [exp]	9.32	0.8332

Compare expression of checked genes

Potri.019G019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.