Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08610 578 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 362 / 5e-118 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 273 / 2e-83 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 242 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 224 / 3e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 225 / 2e-64 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 222 / 3e-64 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 221 / 3e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 221 / 8e-64 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G53700 223 / 1e-63 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109500 [exp] 361 / 2e-117 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 261 / 1e-79 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 260 / 4e-79 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 260 / 7e-79 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 259 / 1e-78 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 255 / 3e-76 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 252 / 4e-74 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 240 / 5e-71 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G276500 [exp] 241 / 2e-70 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022025 [exp] 600 / 0 AT1G08610 507 / 2e-175 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042567 [exp] 590 / 0 AT1G08610 504 / 2e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 233 / 2e-66 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 233 / 2e-66 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025533 [exp] 229 / 2e-65 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 228 / 2e-65 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 227 / 6e-65 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 226 / 8e-65 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 226 / 2e-64 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 224 / 3e-64 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G019200.1 pacid=42773257 polypeptide=Potri.019G019200.1.p locus=Potri.019G019200 ID=Potri.019G019200.1.v4.1 annot-version=v4.1 ATGGGTTTTACAGTTTCCCCGCAGAACTCTATAGTTGAGGTTCATTGTTTGCAAGGCTTGCAAAGGTGCTCTAATCAAGCTGGGTCGAGTTTCGGTGTTG TTAGTTGCTCAGCATTGAAGGGGTCAACTTTTTATCTAAATTGTACAATAAATTGCAGTTACAGAAATCAGTTGTATTGGCATGGGAAAGAATTTCTCAG GTCTGGAAGAACTTTGTTTTCTTTACAGTGTAGAGGAGTGCAAAGTGTCAGCATTGATAGAGTTGATGAAAATGATCAAGATGACTGGAACGTAGGAAGT CATGTATCAGGTTCTGGGAGGGATTTTAGAGTGGAAATGACCACAAGGAATCATGGATCTTCAATTTTGTTTGCTGATGGACCCCTTGTTGAAAATGATG AGGAAACCAACAATGAAATTCTTCACAATTTGTGCAAAAAGGGGAGCTTGATGGAAGCAACAAAGCTGATAGATATTATGTCACGTGTAAACCAAATTCC CAACTCGACTTGTTCCACAAACTTAATAAGGGGCCTTGTCAGAATTGGTCGGATAGAAAGAGCTTCAAGGGTTCTTAAAACTATGGTCATGTCTGGTTTG GTTCCGGATGTTATTACATACAACATGATGGTAGGAGGTTTCTGTAAGAGAAGACAATTAAGATCTGCCATTGATCTGCTGGAAGACATGAGCTTGAGTG GTTGTCCCCCAGATGTGATCACTTACAATACAATAATCCGCAGCCTGTTTGATAACGGAAAATTTGATCAGGCTGTGGAATTCTGGAGGGGGCAATTAAG GAGGGGTTGTCTTCCTTATCTAATACCTTACACGATACTCATCGAGCTAGTCTGGAAGCATTGTGGAACTGTGCGGGCCTTGGAAGTATTGGAAGATATG GCTATCGAGGGCTGTTATCCAGATCTCGTTACCTACAATTCATTGGTTAATTTTGCTAGTAAAGAGGGAAAGTACGAGGATGCAGCTTTGATTATATACA ACATTCTGTCTCATGGGATGGAGCCCAATGCCATAACTTATAACAGTCTTCTCCATTCTCTTTGTAGCTGTGGATTATGGGATGAAGTAGATGAGATCCT TGCAATCATGAAAAAAACTTCCCATCCTCCAACTGTGGTTACATACAACATTCTGATTAATGGGTTGTGCAAATGTGGACTTGTGGAGCGGGCAATTAAC TTTTTCGTTCAAATGGTTTCTGAAAATTGTTCTCCTGACATTATAACTTACAATACTCTCCTCACCGCTCTATGCAAAGAGGGAATGGTGGATGAGGCCC TTCAAGTATTTGTCCTCTTGAGTGATAGCAACTGTTCTCCTGGGTTAATAACTTACAACACTGTGATTGATGGATTGACTAGAAGGGGCTATATGGATGA AGCATTGAAATTATACAATCAAATGATAGAAAAAGGGATAGCTCCTGATGGTATCACCCATCGTTCTTTGGTTTGGGGGTTTTGCTGGATAGATCAAGTT GAGGATGCTGTGGAGATATTGAGGGAGATGGGAAAGAGAGACCACAGGATCAATAGTAGTGCTTACAGATTGGTAATCAATGGATTATGTAGAAATAAGA GGGTAGATATTGCAATACAAGTTCTGGAAATGATGATCTCGGGTCGATACAAGCCAGATGAAGAGATTTATTCTACTTTAATTAAAAGTGTTGCTGATGC TGGTATGGTTGAAGAGGCGGATGAATTGCATCAAAAGTTGATAGAAAGAAAGGTTCTTAGAACCATATTGGACAAACCATGA
AA sequence Show only first row Show all	>Potri.019G019200.1 pacid=42773257 polypeptide=Potri.019G019200.1.p locus=Potri.019G019200 ID=Potri.019G019200.1.v4.1 annot-version=v4.1 MGFTVSPQNSIVEVHCLQGLQRCSNQAGSSFGVVSCSALKGSTFYLNCTINCSYRNQLYWHGKEFLRSGRTLFSLQCRGVQSVSIDRVDENDQDDWNVGS HVSGSGRDFRVEMTTRNHGSSILFADGPLVENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGL VPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDM AIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAIN FFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQV EDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKVLRTILDKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08610			Pentatricopeptide repeat (PPR)...		Potri.019G019200 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	1.00	0.9301
AT3G11810			unknown protein		Potri.008G091600 [exp]	3.46	0.8951
AT1G56345			Pseudouridine synthase family ...		Potri.013G009300 [exp]	4.47	0.8955
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	5.29	0.8965
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.017G126600 [exp]	5.47	0.8823
AT1G77405			Pentatricopeptide repeat (PPR)...		Potri.002G080300 [exp]	6.92	0.9035
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	7.74	0.8861
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	10.53	0.8980
					Potri.005G126301 [exp]	11.22	0.8877
AT1G16790			ribosomal protein-related (.1)		Potri.010G254100 [exp]	11.95	0.8855

Compare expression of checked genes

Potri.019G019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.