Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04760 776 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09900 428 / 1e-143 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 290 / 1e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 263 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 264 / 4e-79 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G07290 263 / 2e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 257 / 2e-77 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 257 / 3e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 256 / 5e-77 RPF2 rna processing factor 2 (.1) AT3G22470 249 / 1e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047000 [exp] 1060 / 0 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 437 / 4e-147 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 324 / 1e-103 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 315 / 4e-100 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 283 / 2e-86 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 264 / 3e-80 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 263 / 7e-80 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 265 / 3e-79 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 263 / 8e-79 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000554 [exp] 550 / 0 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014660 [exp] 542 / 0 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031215 [exp] 275 / 6e-85 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 270 / 3e-82 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10031792 [exp] 268 / 3e-82 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 270 / 2e-81 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019524 [exp] 262 / 2e-77 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 260 / 2e-77 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 258 / 2e-76 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015113 [exp] 252 / 4e-76 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G019300.1 pacid=42774694 polypeptide=Potri.019G019300.1.p locus=Potri.019G019300 ID=Potri.019G019300.1.v4.1 annot-version=v4.1 ATGACAATGTTTTCCACTGAGTTTATCTCTCATAGTTGTAGCTTTCCCTTCACTAGCAAACATTTTAAACTCTCTTTACATTCACTTCAAAGCAATGTAG TTAGCTGCATAAACCCTACTCATAATGACACTAACAGTAACCTTGGAAACCCACCAAAATTAAGGAGGGTTTTACCTGAAACAAAACCAACCCATGTTTT ATCTTATGATTTCAAAGAAACCCATTTGATGAAACTGCTTAATAGGTCTTGTAAAGCAGGCAAGTGTAATGAGTCACTCTACTTTCTTGAGTGTATGGTT GCAAAAGGTTATCAGCCTGATGTTATTATGTGTACTAAGCTCATTAAAGGGTTTTTTAATTCAAGAAATATAGAGAAGGCTACTAGGGTGATGGAGATTT TGGAGAAGCATGGTGAACCTGATGTTTTTGCTTATAATGCAGTGATCAGTGGGTTTTGTAAGGCTAATCGGATTGAAAGTGCAAAAAAAGTGCTTGATAG GATGAAAAGAAAGGGATTTTCGCAGGATGTTGTTACTTACAATATAATGATTGGGACTTTTTGTAGCAAGGGAAAGATTGATTTGGCTTTAAAGGTTTTT GAAGAGTTGTTGAAAGATAATAATTGTAAGCCAACTCTTATTACCTACACGATTTTGATAGAGGCACACATTCTTGAAGGTGGGATTGATGAAGGTTTGA AGCTTTTGGATGAGATGTTGTCAAGAGGGCTTGAACCAGATACATTTACTTATAATGTAATTGTTAGGGGGTTGGGCAAAGAGGGGAAGGTTAATCAAGC TTTTGAGCTTGTTAGGACCTTGAATTCTAGGGGTTGTAAACCAGATGTGATTACATATAATATATTGTTACGAGCGTTGTTGGATCAAGGGAAATGGTAT GAAGGGGAGAAACTGATGGATGAGATGTTTTCAAGAGGTTGCGAGCCTAATGTGGTTACATATAGCATTTTGATTAGCTCACTGTGTCGTGATGGGAAAA TTGAGGAATCAGTGAACTTAGTGAAGGTTATGAAGGAAAAGGGTTTGACTCCGGATGCTTACTGTTATGATCCATTGATTGCTGCTTTTTGTAGAGAGGG AAAACTGGATATGGCAATCAAGTTTTTGGATTACATGATCTCTGATGGTTTTTTGCCAGATATAGTCAACTACAATACAATAATGGCCGCTCTTTGTAAG AATGGAAATAGTGATCATGCTGTGGAAATATTTGGAAAGCTAGAGGAAGTGGGTTGTCCCCCAAATGTCAGTTCTTATAACACAATGTTAAGTGCATTGT GGGGTTCTGGAGACAGATATAGAGCCTTAGGAATGATATCGCAGATGCTTAGCACAGGAATTGATCCAGATGGAATTACTTATAATTCACTTATTTCATG TTTGTGCAGAGATGGAATGGTGGATGAAGCTATTGGGCTATTGGCAGACATGCTAAGTGGTAGGTTCCAGCCAAACATAGTCAGCTATAATATCGTTCTT CTTGGTTTATGCAAAGTACATAGAATTGATGATGCTATTGAAGTGCTGACAGCAATGATTGAAAATGGTTGCCAGCCAAATGAAACTACTTATACGCTGT TGATTGAAGGTATTGGTTTCTCGGGATCAAGAGCTCAAGCTATGGAGTTGGCTAATTCTCTTTATAGTATGAACGCCATTTCTGAAGGTTCATACAAACG TTTGAACAAGGTCTTCCCTTTGCTTGATGTTTACAAAGACCTCACTGTCTTTGGACACTAA
AA sequence Show only first row Show all	>Potri.019G019300.1 pacid=42774694 polypeptide=Potri.019G019300.1.p locus=Potri.019G019300 ID=Potri.019G019300.1.v4.1 annot-version=v4.1 MTMFSTEFISHSCSFPFTSKHFKLSLHSLQSNVVSCINPTHNDTNSNLGNPPKLRRVLPETKPTHVLSYDFKETHLMKLLNRSCKAGKCNESLYFLECMV AKGYQPDVIMCTKLIKGFFNSRNIEKATRVMEILEKHGEPDVFAYNAVISGFCKANRIESAKKVLDRMKRKGFSQDVVTYNIMIGTFCSKGKIDLALKVF EELLKDNNCKPTLITYTILIEAHILEGGIDEGLKLLDEMLSRGLEPDTFTYNVIVRGLGKEGKVNQAFELVRTLNSRGCKPDVITYNILLRALLDQGKWY EGEKLMDEMFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIKFLDYMISDGFLPDIVNYNTIMAALCK NGNSDHAVEIFGKLEEVGCPPNVSSYNTMLSALWGSGDRYRALGMISQMLSTGIDPDGITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYNIVL LGLCKVHRIDDAIEVLTAMIENGCQPNETTYTLLIEGIGFSGSRAQAMELANSLYSMNAISEGSYKRLNKVFPLLDVYKDLTVFGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.019G019300 [exp]	0	1
AT1G65070			DNA mismatch repair protein Mu...		Potri.004G041900 [exp]	2.00	0.9222
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.011G053900 [exp]	2.00	0.9456
AT1G31920			Tetratricopeptide repeat (TPR)...		Potri.001G135400 [exp]	2.82	0.9538
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	12.96	0.8762
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G155000 [exp]	13.19	0.9156
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.005G151200 [exp]	13.22	0.9157
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.002G077600 [exp]	18.54	0.8952
AT5G24690			Protein of unknown function (D...		Potri.001G210500 [exp]	19.89	0.8572
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Potri.001G193300 [exp]	20.00	0.8518
AT4G31115			Protein of unknown function (D...		Potri.005G179800 [exp]	20.24	0.8810

Compare expression of checked genes

Potri.019G019300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.