Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28850 886 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 885 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 868 / 0 Calcium-binding EF-hand family protein (.1) AT5G44090 809 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 745 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 100 / 4e-22 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047300 [exp] 1025 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 873 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 820 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.010G022300 [exp] 98 / 1e-21 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 91 / 2e-19 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029614 [exp] 847 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10021174 [exp] 843 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 832 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 832 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 819 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 810 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 767 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 750 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 722 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 712 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.019G019500.2 pacid=42774263 polypeptide=Potri.019G019500.2.p locus=Potri.019G019500 ID=Potri.019G019500.2.v4.1 annot-version=v4.1 ATGGAAACAACGACGAGCGATGTTGTCATGTTAGATGCGGAGTTGCTTCAGCTACCAGAGATTTCGCCTTTAGCTTTCAAATCTTACCCTCACTTTCCCC AAACACTCTTCGATCAGTGGCTCTCTCTTCCCGATCCCAATAAGCTGGTGACATCCCTGGTTAATGATGCCAAGACAGGTGCTCCATTGAATGTCTCTGG AAACTCTTCTAGTGCAAATGCTGCCACTGTTAATTCCTTACCTTCCATGTTTCCTGCGGGAAGCACACCACCTCTTTCTCCCAGAAGTTCAACCGGTTCC CCTCGTGTGACAAAGCAAAGGCCTGGCCCATCTAATTTAGGCTCTCCTTTGAAAGTAGTCAGTGAGCCAGTAAAGGAGTTGATACCACAGTTTTATTTTC AAAATGGCCGCCCCACACCAAATGAACTAAAAGAACAATGCTTGATTCGGATCAATCACTTTTTCTATGGCCGCTTGGATGGATTGCAAATACATGAGTT CAAATCGGTCACAAAGGAAGTATGCAAGCTGCCATCATTCTTCTCCACGGTTCTATTTAGAAGGATTGATGTTAATAGCACCGATTTCGTGACAAGGGAT GCTTTTCTTGATTATTGGATAAATGGCAACATGTTGACATTGGATATAGCTACCCAAATTTTCACAATTTTGAAACAACCAGATCTCAAATACCTCACCC AGGAAGACTTTAAACCTGTGCTTCAAGAACTACTGGCAACTCATCCAGGATTGGAGTTCTTACAGAGCACACCCGAGTTTCAGGAAAGATATGCTGAAAC TGTAATATACAGAATTTTTTACTACATAAATAGATCAGGGAATGGTAATCTTACCCTCAGGGAGCTGAAGCGTGGGAACTTAATTGATGCAATGCAACAT GCAGATGAAGAAGAGGACATAAATAAAGTTTTGAGGTACTTCTCTTATGAGCACTTTTATGTGATATACTGCAAGTTTTGGGAGCTGGACACAGATCATG ATTTTCTTATCGACAAAGAGAACCTTATTAGATATGGGAACCATGCGCTTACCTACCGGATTGTTGATAGAGTATTCTCCCAGGTTGCTAGAAAATTTAC TAGCAAGGCTGAAGGAAAGATGGGATATGAAGATTTTGTGTATTTCATTTTGTCAGAGGAAGACAAGTCATCTGAGCCAAGTCTTGAGTATTGGTTCAAA TGCATAGATTTGGATGGAAATGGAATCCTGACACGGAATGAGATGCAGTTCTTTTATGAGGAGCAGTTGCATAGGATGGAGTGCATGGCTCAAGAGCCTG TGCTTTTTGAAGATATATTATGCCAGATAATTGATATGATTGGACCAGAGGATGAGAGCTATATCACCCTTCGGGACCTCAAAGGTTGTAAACTTTCAGG AAGTGTTTTCAACATCCTTTTCAACCTTAATAAATTTATGGCATTTGAAACCCGTGATCCATTTCTTATTCGTCAGGAGCGTGAGAATCCAACACTGACA GACTGGGATCGCTTTGCGCATAGAGAATATATTAGGCTTTCAATGGAAGAAGATGTTGAAGATGCTTCTAATGGCAGTGCAGAAGTTTGGGATGAATCAC TAGAGGCTCCTTTCTGA
AA sequence Show only first row Show all	>Potri.019G019500.2 pacid=42774263 polypeptide=Potri.019G019500.2.p locus=Potri.019G019500 ID=Potri.019G019500.2.v4.1 annot-version=v4.1 METTTSDVVMLDAELLQLPEISPLAFKSYPHFPQTLFDQWLSLPDPNKLVTSLVNDAKTGAPLNVSGNSSSANAATVNSLPSMFPAGSTPPLSPRSSTGS PRVTKQRPGPSNLGSPLKVVSEPVKELIPQFYFQNGRPTPNELKEQCLIRINHFFYGRLDGLQIHEFKSVTKEVCKLPSFFSTVLFRRIDVNSTDFVTRD AFLDYWINGNMLTLDIATQIFTILKQPDLKYLTQEDFKPVLQELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSGNGNLTLRELKRGNLIDAMQH ADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRVFSQVARKFTSKAEGKMGYEDFVYFILSEEDKSSEPSLEYWFK CIDLDGNGILTRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIGPEDESYITLRDLKGCKLSGSVFNILFNLNKFMAFETRDPFLIRQERENPTLT DWDRFAHREYIRLSMEEDVEDASNGSAEVWDESLEAPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28850			Calcium-binding EF-hand family...		Potri.019G019500 [exp]	0	1
AT4G39820			Tetratricopeptide repeat (TPR)...		Potri.005G079300 [exp]	1.00	0.8135
AT3G43220			Phosphoinositide phosphatase f...		Potri.006G136400 [exp]	3.87	0.7108
AT2G42520			P-loop containing nucleoside t...		Potri.001G007900 [exp]	6.00	0.6731
AT5G06410			DNAJ heat shock N-terminal dom...		Potri.006G200900 [exp]	8.12	0.7568
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.003G005700 [exp]	9.16	0.7098
AT2G10950			BSD domain-containing protein ...		Potri.018G125400 [exp]	10.24	0.6555
AT2G46900			unknown protein		Potri.014G109500 [exp]	15.87	0.6980
AT5G16110			unknown protein		Potri.017G114700 [exp]	20.49	0.6583
AT1G54610			Protein kinase superfamily pro...		Potri.005G045500 [exp]	23.87	0.5968
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	30.00	0.7087

Compare expression of checked genes

Potri.019G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.