Plant FIBer expression Database

Potri.019G019600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04480 940 / 0 endoribonucleases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G047400
[exp]
1391 / 0 AT3G04480 944 / 0.0 endoribonucleases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008194
[exp]
1002 / 0 AT3G04480 861 / 0.0 endoribonucleases (.1)
Lus10027962
[exp]
958 / 0 AT3G04480 840 / 0.0 endoribonucleases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0534 YjgF-like PF01042 Ribonuc_L-PSP Endoribonuclease L-PSP
CL0039 HUP PF01902 Diphthami_syn_2 Diphthamide synthase
Representative CDS sequence
>Potri.019G019600.2 pacid=42773098 polypeptide=Potri.019G019600.2.p locus=Potri.019G019600 ID=Potri.019G019600.2.v4.1 annot-version=v4.1
ATGAAGGTGGTGGCTCTAGTAAGCGGCGGCAAGGATAGTTGTTATGCTATGATGAAGTGCATCCAATATGGCCATGAGATTGTTGCATTGGCAAATTTGA
TGCCTGCTGATGATTCAGTTGATGAGCTAGATAGCTTCATGTATCAAACTGTTGGGCACCAAATAATTGTCAGCTATGCAGAATGCATGGGATTGCCGTT
ATTCAGAAGGCGAATACAAGGATCCACAAGGCATCAATCACTTAACTACAAGACAACCCCAGGTGATGAAGTGGAAGACATGTTCATGTTACTGAATGAA
GTCAAAAGACAGATTCCCTCTATCACAGCTGTATCTTCCGGCGCTATTGCATCTGATTATCAGAGGTTACGAGTGGAAAGTGTTTGTTCAAGGTTAGGGC
TTGTTTCTCTAGCATATTTGTGGAAACAAGATCAGTCGTTGCTCCTTCAAGAAATGATAACAAATGGGATTTTGGCTATCACTGTAAAGGTAGCAGCCAT
TGGTTTAGAACCTTCAAAGCACTTGGGCAAAGAAATAGCATTCTTGAACACCCATCTGCATAAGTTGAAAGAGCTGTATGGGATAAATGTATGTGGTGAA
GGAGGAGAATATGAAACACTGACACTTGACTGTCCACTTTTTGTAAATGCCAGAATTGTGCTCGATGAATTTCAAACTGTACTACACTCTCCAGGCTCCA
TAGCTTCAGTTGGGGTCATTCATCCTTTGACATTTCATTTGGAAAATAAGGAGACAGCCATTTCATTAAGTAATAATGATAAAGCCAACTATTCCTCTCT
GGGAAAAAATGGTTCTGTGTTTGAAGTTCAAGGAGACTGCCCACAAAGAAATGAGGCTACATGCCAGTCTAATGCTGAAAGGACTAATTTAGTTGAAGTT
AGTGATGATAGAATTTACATCTCTAGAACGAAGAAGGATAATATATTTTCCATTTGTTGCTGGTTGCAAGATTCGTGCAAAAATTCAGCAGGTTCACATG
AAGATCTAGCAATTGTTCTGAAGCACATTGAATCACAGCTTACAGGATGTGGTTTTGGTTGGGAGCATGTCCTGTATATTCATCTTTATATTGCTGATAT
GAATGAGTTTGCTACGGTAAATGAGACATATGTGAGATTCATTACCCAGGACAAGTGCCCTTTTGGTGTTCCATCACGCAGTACAATAGAACTGCCTATG
TTGCAAGCGAGTTTGGGTAGAGCTTATGTTGAAGTTCTTGTGGCAAATGATAACAGCAAAAATGTGTTGCATGTGCAAAGTATTTCCTCATGGGCACCCA
GTTGCATTGGACCATATAGCCAGGCAACTTTGCATAAGGAGATACTGCACATGGCTGGACAGTTGGGGCTTGACCCGGCCACTATGACTCTATGCAATGA
AGGCCCCTCTGCTGAGCTGGAACAAGCACTAGAAAATAGTGAAGCAGTGGCAAATGTCTTTAACTGCTCAATATCTACCTCTGCTATTGTTTTTACCATT
TACTGCTCTACAAATATTCCACTGCCTGAAAGACTTAGGATTCAGGAGAAGCAGGACTCTTTTCTAAAGCAAATGAGACTGCTGCAACTAGAAAAAGGAA
GCAAGTGCAAAATTCTTTATCCAATATTTCTATATGTTCTTGTGCCTGATCTGCCAAAAAGGGCATTTGTAGAAGTTAAGCCCATCCTTTTTGTCCCAGA
GGACACAGAAACAGCAGTTACAAGTGTTCAAAACCCAACCTCTTTTACAGTGGCTAATTGTTGGGGATTTCAGCATGTGCAGTGGCATGATTCTTGCATT
CAAAGTTGTGTTGTTAGTGGGAAGATATGTGCAGTTATTTTATCTATCACAGAAGATCATGTTGCTAAGATCTGTTCTGAGTCCCTTGGTGTCAAAGAGA
AAGATGTGGATTATCATAATTCTGTCTCAAAAGGGGATATGGAAAGAGTATCAAGATTTTGTGTTTATCTTCTTGATAAAGGGATTGTGGAAAATGGTTT
TTCTTGGGAAGACACAATGAATTTAAGGATCTACTTCCCAACGAACAGCAGCATTCAACTGGAGACGTTGTCACTCTTATTCAAAAATGCAATGAACGAA
CTTGTTGAGATTGACCGGAGGGTTCAAATTGGGAAAGAACCCATATTTAACATCGTTCCAGTATTAGGTTCTGGGAGCTCTGCTGCATCAATGAATAATA
TAATCACATGTGAACTATTTGCTCGGAAATTTTGA
AA sequence
>Potri.019G019600.2 pacid=42773098 polypeptide=Potri.019G019600.2.p locus=Potri.019G019600 ID=Potri.019G019600.2.v4.1 annot-version=v4.1
MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLMPADDSVDELDSFMYQTVGHQIIVSYAECMGLPLFRRRIQGSTRHQSLNYKTTPGDEVEDMFMLLNE
VKRQIPSITAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGILAITVKVAAIGLEPSKHLGKEIAFLNTHLHKLKELYGINVCGE
GGEYETLTLDCPLFVNARIVLDEFQTVLHSPGSIASVGVIHPLTFHLENKETAISLSNNDKANYSSLGKNGSVFEVQGDCPQRNEATCQSNAERTNLVEV
SDDRIYISRTKKDNIFSICCWLQDSCKNSAGSHEDLAIVLKHIESQLTGCGFGWEHVLYIHLYIADMNEFATVNETYVRFITQDKCPFGVPSRSTIELPM
LQASLGRAYVEVLVANDNSKNVLHVQSISSWAPSCIGPYSQATLHKEILHMAGQLGLDPATMTLCNEGPSAELEQALENSEAVANVFNCSISTSAIVFTI
YCSTNIPLPERLRIQEKQDSFLKQMRLLQLEKGSKCKILYPIFLYVLVPDLPKRAFVEVKPILFVPEDTETAVTSVQNPTSFTVANCWGFQHVQWHDSCI
QSCVVSGKICAVILSITEDHVAKICSESLGVKEKDVDYHNSVSKGDMERVSRFCVYLLDKGIVENGFSWEDTMNLRIYFPTNSSIQLETLSLLFKNAMNE
LVEIDRRVQIGKEPIFNIVPVLGSGSSAASMNNIITCELFARKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G04480 endoribonucleases (.1) Potri.019G019600
[exp]
0 1
AT4G02120 CTP synthase family protein (.... Potri.014G123200
[exp]
4.35 0.7609
AT2G41890 curculin-like (mannose-binding... Potri.016G053800
[exp]
6.32 0.7046
AT2G02560 TIP120, HVE, ET... HEMIVENATA, CULLIN-ASSOCIATED ... Potri.003G000500
[exp]
6.92 0.7331 CAND1.2
AT2G33840 Tyrosyl-tRNA synthetase, class... Potri.010G248900
[exp]
11.22 0.7386
AT2G22400 S-adenosyl-L-methionine-depend... Potri.007G096100
[exp]
12.36 0.7459
AT5G25080 Sas10/Utp3/C1D family (.1) Potri.018G018100
[exp]
14.49 0.6782
AT5G51660 CPSF160, ATCPSF... cleavage and polyadenylation s... Potri.012G022700
[exp]
15.19 0.7359
AT4G18593 dual specificity protein phosp... Potri.016G035700
[exp]
15.23 0.6179
AT5G63960 EMB2780 DNA binding;nucleotide binding... Potri.005G065800
[exp]
16.58 0.7195
AT3G02320 N2,N2-dimethylguanosine tRNA m... Potri.017G099200
[exp]
20.85 0.7120

Potri.019G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.