Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04470 882 / 0 Ankyrin repeat family protein (.1) AT1G04780 650 / 0 Ankyrin repeat family protein (.1) AT3G24210 598 / 0 Ankyrin repeat family protein (.1) AT1G62050 363 / 5e-117 Ankyrin repeat family protein (.1) AT1G11740 335 / 4e-106 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047500 [exp] 1121 / 0 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 679 / 0 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 666 / 0 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 344 / 5e-110 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 342 / 4e-109 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008195 [exp] 937 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 934 / 0 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 719 / 0 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 657 / 0 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 648 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 483 / 1e-166 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1) Lus10027961 [exp] 410 / 1e-140 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10002942 [exp] 337 / 1e-107 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 212 / 1e-61 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [poplar] [flax] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Potri.019G019700.1 pacid=42773914 polypeptide=Potri.019G019700.1.p locus=Potri.019G019700 ID=Potri.019G019700.1.v4.1 annot-version=v4.1 ATGGAAGATTTTTCCAAGTATGCCCATAGCCCTGCTCATTTGGCAGTTGCATGCCGAGATTATGCTACTCTTAAGGGAATTATCTCAACTCTCCCACGGC TTGCCAAGGCTGGTGAAGTTAGTACCGAAGAAGAGTCTCTTGCTGCTGAGCAACAGGCTGATGCTGTCTCGGCTGTCATTGACCGCAGGGATGTTCCTGG CAGAGAGACTCCTTTGCATCTGGCTGTCAGGTTGCGGGATCCAATCGCAGCCGAGATTTTAATGGCGGCTGGTGCTGATTGGAGTCTGCAGAATGAGAAT GGCTGGAGTGCACTTCAAGAAGCGGTTTGCACGAGAGAGGAGTCAATTGCCATTGTAATTGCTCGGCACTACCAACCTCTTGCTTGGGCAAAATGGTGTC GTAGGCTTCCGCGAATTGTTGCTTCAGCAGCTCGTATTCGTGATTTTTACATGGAGATCACGTTTCATTTTGAGAGTTCTGTCATCCCATTTATTGGACG CATTGCCCCATCAGATACTTACCGCATTTGGAAGCGTGGTTCTAACCTCCGCGCTGATATGACTCTCGCCGGCTTTGATGGTTTTCGCATTCAGAGGTCA GATCAAACATTTCTTTTTCTTGGGGAGGGATACTCCTCAGAGGATGGCAACATATCTTTGGCACCAGGTTCTTTGGTTGTTCTTGCTCATAAAGAAAAAG AGGTGACAAATGCTTTGGAGGGGGCTGGCGCCCAACCAACTGAAGCGGAAGTTGCACATGAAGTGGCTTTGATGTCTAAAACTAATATGTATAGGCCAGG CATTGACGTCACTCAGGCAGAGCTTATTCCAAACTTGAATTGGAGACGGCAAGAGAGGACTGAAATGGTTGGAAATTGGAAGGCCAAAGTCTATGACATG CTTCATGTGATGGTCAGTGTAAAGTCAAGACGGGTTCCTGGTGCTATGACTGATGAGGAGCTTTTTGCAGTGGATGAGGAAGAGAGATTAGGAAATGCTG CTGAAAATGATGAGTTTGATGACGTGTTGACTGCTGAGGAGAGGAAACAGTTAGAATCTGCACTTCGTATGGGGAACTCTGATGGTCTTGGTGATGATGA GGAACCTGGTGTTGTTGATAGCCAAGAAAATGGCTCAGGAGGTGTATATGAAAATGGTGAATCTAATGGTGCTGTTAAGGAGAAGAAGAGTTGGTTTGGT TGGAAGAATAAAGGTTCTAAGAACACTAATGATGATCCTGAAGATTCGAAGATCTTGAAAAAATTTTCAAATTTGGCCCCAGAAGGTGGCGCCCAGAAAT CTGACGATCACCAAAAATCATCAGAATCTGCCAGGGAGGATACGGGGGATGCCAGGAAAGGAAAAGATAAAAGCAGCAAGAAGAAAAAGAAGAAAGGGCC CAGTAGTGAATCTAAGCATGAGAGTGAGTACAAGAAGGGTTTGAGACCTGTCTTGTGGCTCACACCAGATTTTCCTTTGAAAACCGAGGAGCTCCTGCCT TTACTTGACATATTAGCCAATAAAGTCAAGGCTATTAGGAGACTCAGAGAGCTTTTGACAACAAAGCTTCCTCTTGGAACATTTCCTGTCAAGGTCGCCA TCCCTATTGTCCCAACTGTCCGGGTGCTTATTACTTTTACAAAATTTGAGGAGCTACAGCCTTCAGAAGAATTCTCAACACCTCTCTCCAGCCCAGCGCA TTTCCAAGATGCAAAGTCCAAGGAATCTGAGGGGGCTTCATCATGGATTTCATGGATGAGAGGGAGTCGAGGTGGGCAATCAAGTGACAGTGATAGTCAC CGGTACAAGGATGAAATTGACCCTTTCCTCATACCATCAGACTATACTTGGGTTGATGCCAATGCGAAGAAACGCCGCATGAAAGCCAAGAAAGCCAGGA ACAAGAAACATAGGAGAGGTTATCCTGCATCACAGGCTGCAGCCAGAGGTGAGGATGGGCAGGCGCATCATTTGAGTGAAGATGCGGAAGAATAA
AA sequence Show only first row Show all	>Potri.019G019700.1 pacid=42773914 polypeptide=Potri.019G019700.1.p locus=Potri.019G019700 ID=Potri.019G019700.1.v4.1 annot-version=v4.1 MEDFSKYAHSPAHLAVACRDYATLKGIISTLPRLAKAGEVSTEEESLAAEQQADAVSAVIDRRDVPGRETPLHLAVRLRDPIAAEILMAAGADWSLQNEN GWSALQEAVCTREESIAIVIARHYQPLAWAKWCRRLPRIVASAARIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRS DQTFLFLGEGYSSEDGNISLAPGSLVVLAHKEKEVTNALEGAGAQPTEAEVAHEVALMSKTNMYRPGIDVTQAELIPNLNWRRQERTEMVGNWKAKVYDM LHVMVSVKSRRVPGAMTDEELFAVDEEERLGNAAENDEFDDVLTAEERKQLESALRMGNSDGLGDDEEPGVVDSQENGSGGVYENGESNGAVKEKKSWFG WKNKGSKNTNDDPEDSKILKKFSNLAPEGGAQKSDDHQKSSESAREDTGDARKGKDKSSKKKKKKGPSSESKHESEYKKGLRPVLWLTPDFPLKTEELLP LLDILANKVKAIRRLRELLTTKLPLGTFPVKVAIPIVPTVRVLITFTKFEELQPSEEFSTPLSSPAHFQDAKSKESEGASSWISWMRGSRGGQSSDSDSH RYKDEIDPFLIPSDYTWVDANAKKRRMKAKKARNKKHRRGYPASQAAARGEDGQAHHLSEDAEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04470			Ankyrin repeat family protein ...		Potri.019G019700 [exp]	0	1
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	4.00	0.7886
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	4.47	0.7782
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.003G222700 [exp]	5.56	0.7975
AT5G25280			serine-rich protein-related (....		Potri.006G060800 [exp]	6.70	0.7703
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.018G107000 [exp]	9.32	0.7862
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	10.81	0.7463	MBD912
AT1G13460			Protein phosphatase 2A regulat...		Potri.017G070100 [exp]	12.48	0.7311
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.015G104000 [exp]	14.45	0.7202
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	16.43	0.7543
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.015G144100 [exp]	22.58	0.6039

Compare expression of checked genes

Potri.019G019700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.