Plant FIBer expression Database

Potri.019G019800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28910 680 / 0 unknown protein
AT5G28960 638 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G047600
[exp]
1023 / 0 AT5G28910 668 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027959
[exp]
788 / 0 AT5G28910 702 / 0.0 unknown protein
Lus10008196
[exp]
786 / 0 AT5G28910 695 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.019G019800.1 pacid=42774032 polypeptide=Potri.019G019800.1.p locus=Potri.019G019800 ID=Potri.019G019800.1.v4.1 annot-version=v4.1
ATGAATACGGAGCCATTGAACCAGAAATCTCTTGAGAGAGTAGTGTCACAGAAAGCTTTGCAAATTGGTAGTTCATTTCCATGTCAAATTTGTGTGGTGG
GTTTTCTTAGTGGAGTTTGCCTTACCTCTTTGTTTTTGGCTCTTCTTACTTCTCTGGGGACTTTTGAGTTTGGTGGCATTTCATTCTTTGCCATCTCTCA
GGGAAATTCTCCTTTGAATTCTTCAAGTTCTGGGTTTATCAATACAGTTGCAAATGCGGATTGCAAATTTAAAAGAAACGAAGTTGTTGCAGAGAGGTGG
GTTGATTCAAAGAGAAGTAAAGATGGGAGTGATGATGAGAGAGTTTTGTTATTGCATTCTGCTTGGAGTGCCTTGTTATCCGAATCAGTTGATGGAAAGA
GTGCTTTCTGGCACAGTGCTGGACTTGACAAATCCACCGTGCCAAATGCCCCTCATTTGGAGAACTGCAAATTGAGTGAACGAACAAATGAACGTCTTGA
TAAGCGCGCTGAAAATGAGAGGTTACCTCCTTGGACAACTTGGAAGGGATTATTAGACACACACCCTGCATCCATGGCCAATGAGCAGCTTAAGTACTTT
AGGCACCAAGCATTATCTGAAGGTGCTTATCCTCCCTGGATTACTGGATCGGATGAAGAAAACTATCCTCTTACTAGGAAAGTGCAGCGTGACATATGGC
TCCATCAGCATCCTGAGAACTGCAGGGATCCTAATGTAAGATTTCTGGTTGCTGACTGGGAGAGGTTACCTGGTTTTGGTATTGGAGCCCAGCTAGCTGG
AATGTGCGGGCTTCTTGCGATTGCAATCAACGAGAAAAGAGTCCTTGTTACCAGCTACTACAATAGAGCTGACCATGATGGTTGTAAAGGTTCTTACAAC
TCCAGTTGGTCTTGCTACTTCTTTCCAGAAACATCCCAAGAATGTCGAGATCGTGCATTTGAGCTATTGGGTAATAAAGAAGCGTTGGAAAGGGGAATTA
TAACTACAAAAGACAGTTATAAATCAAAAGAAATATGGACTGGAAGGACTCTAAGGGTATGGGGAGAACCCTGGAGTTTTTTGCAACCAACAACAGAAAT
AAATGGGAGTTTGGTCGCCTTTCATCGTAAAATGGATCGAAGATGGTGGAGAGCACAGGCAATACGATACTTGATGAGATTCCAAACTCAGTATATGTGT
GGCTTGATGAATATTGCCCGAAATGCTGCTTTTGGGAAGGAAGCCGCGAAGATGGTTCTTACAAGTCTCGGAACAGAATGGCCAAAGGATTTTCAGAAGC
ACAGATCAGATATTGCAGAATTCGTATGGTCCAGTCACAGACCATGGATTCCTAGGCCATTGTTGAGCATGCATGTAAGAATGGGAGACAAGGCATGTGA
AATGAAGGTTGTTGAGTTTGAAGGTTACATGCATCTTGCTGACCGGATCAGACAGCATTTTCCTCACCTCAAGACTGTTTGGCTGTCAACTGAAATGCAG
GAAGTTGTCGACAAGTCAAAGCAATACACGAAATGGGATTTCTACTACACGAATGTAAGACGCCAAGTTGGGAACATGACAATGGCCACATATGAGGCAA
GTCTGGGCAGGCAAACCAGTACAAACTATCCCCTTGTTAATTTCTTGATGGCAACAGAGGCCGACTTTTTCGTCGGAGCATTGGGTTCGACATGGTGCTA
TCTCATAGATGGTATGAGGAACACTGGAGGGAAAGTAATGGCTGGTTACCTGAGCGTTAACAAAGATCGGTTCTGGTAG
AA sequence
>Potri.019G019800.1 pacid=42774032 polypeptide=Potri.019G019800.1.p locus=Potri.019G019800 ID=Potri.019G019800.1.v4.1 annot-version=v4.1
MNTEPLNQKSLERVVSQKALQIGSSFPCQICVVGFLSGVCLTSLFLALLTSLGTFEFGGISFFAISQGNSPLNSSSSGFINTVANADCKFKRNEVVAERW
VDSKRSKDGSDDERVLLLHSAWSALLSESVDGKSAFWHSAGLDKSTVPNAPHLENCKLSERTNERLDKRAENERLPPWTTWKGLLDTHPASMANEQLKYF
RHQALSEGAYPPWITGSDEENYPLTRKVQRDIWLHQHPENCRDPNVRFLVADWERLPGFGIGAQLAGMCGLLAIAINEKRVLVTSYYNRADHDGCKGSYN
SSWSCYFFPETSQECRDRAFELLGNKEALERGIITTKDSYKSKEIWTGRTLRVWGEPWSFLQPTTEINGSLVAFHRKMDRRWWRAQAIRYLMRFQTQYMC
GLMNIARNAAFGKEAAKMVLTSLGTEWPKDFQKHRSDIAEFVWSSHRPWIPRPLLSMHVRMGDKACEMKVVEFEGYMHLADRIRQHFPHLKTVWLSTEMQ
EVVDKSKQYTKWDFYYTNVRRQVGNMTMATYEASLGRQTSTNYPLVNFLMATEADFFVGALGSTWCYLIDGMRNTGGKVMAGYLSVNKDRFW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G28910 unknown protein Potri.019G019800
[exp]
0 1
AT5G50870 UBC27 ubiquitin-conjugating enzyme 2... Potri.015G103400
[exp]
1.41 0.8706
AT2G45400 BEN1 NAD(P)-binding Rossmann-fold s... Potri.002G147702
[exp]
1.73 0.8309
AT2G18420 Gibberellin-regulated family p... Potri.005G239000
[exp]
2.00 0.8598
AT1G15780 unknown protein Potri.003G013300
[exp]
2.82 0.7935
AT3G23200 Uncharacterised protein family... Potri.010G073000
[exp]
4.24 0.7799
Potri.019G087800
[exp]
7.34 0.7732
AT5G50530 CBS / octicosapeptide/Phox/Bem... Potri.015G098100
[exp]
10.19 0.7766
AT1G51660 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-A... Potri.013G110450
[exp]
10.95 0.7267
AT5G61580 PFK4 phosphofructokinase 4 (.1.2) Potri.001G079501
[exp]
20.39 0.7512
AT4G39490 CYP96A10 "cytochrome P450, family 96, s... Potri.007G080300
[exp]
22.64 0.7247

Potri.019G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.