Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21840 239 / 2e-67 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G21850 205 / 2e-55 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G21830 193 / 1e-52 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G48400 136 / 4e-33 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G22355 136 / 6e-33 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G11550 134 / 2e-32 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G02180 135 / 3e-32 DC1 domain-containing protein (.1) AT5G59930 131 / 2e-31 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40320 129 / 6e-31 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G55800 126 / 5e-30 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057800 [exp] 223 / 1e-62 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 198 / 1e-53 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 187 / 1e-49 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 185 / 6e-49 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 180 / 2e-47 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044600 [exp] 178 / 2e-46 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 176 / 5e-46 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044732 [exp] 172 / 9e-45 AT5G22355 261 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G172400 [exp] 122 / 2e-28 AT2G21840 95 / 6e-20 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003919 [exp] 78 / 6e-16 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 76 / 7e-14 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 59 / 1e-08 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10017477 [exp] 56 / 3e-08 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 49 / 1e-05 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF03107 [poplar] [flax] C1_2 C1 domain
Representative CDS sequence Show only first row Show all	>Potri.019G020100.1 pacid=42774656 polypeptide=Potri.019G020100.1.p locus=Potri.019G020100 ID=Potri.019G020100.1.v4.1 annot-version=v4.1 ATGGAGGTTGGACAGTTCAGCCATGAGTCCCATGGCCATGCGTTGACTTTTTATGAGGAGAGTGAGGAGAAGCTTAAGAAGATTGCCAAGCTATCCGGGG AGGAGATTGGATCTCCCTTATGCTATGGTTGCTTTGAAACCATTCATGGTCCAGCCTATTTTTGTGAAATTTGTGGTGACTTTTGGCTGCACAAATCATG CTTTGAATTGCCCTCTGAGCTACCGAAGCATTCTCTTCACTCAATTCATCCTCTCACCCTCATTGTTAGACCTCCTAGCTTAGCTGGGTTCTTTGTCTGT GATGGATGTAGAGATATGTCTCCTGGCTTTGCCTTCCACTGCAAAGCATGCCGGTTCAATCTTGATGTCAAATGTGCGATTTCAACTGACGGCGAGGATC TGAGATCAAGAAAAGGTGTGAAAAATACCGAGATTCCCTACTTCGGTGATGAGCACCTGCTAGTTTCCTTCAATGCCAAGCAGGAAGTTGAAAAAACTTG TACTGGATGCCAACTGCTCCTTTCAGGTCCTGCCTACGGTTGCTTGGACTGTGAATTCTACCTCCATGAATCATGTAAAGATATGCCATCGGAAATACAA CATCCATACCACCCTCCGCACCCTCTCCGTGCTCAAGTTGCTGAATATGGCTCAGAATGTGATGCCTGTCACATGCCAATTAGGAAGGTTTTTTATCGAT GTTCTGAATGCGACTTCAATCTGCATATTCTATGTGCTAACAAGTCTCTACAGGTAGCATCTTCCTTAAAACACAAGGGCCATGAGCACAATCTCTATTA TTTTGTGGCGAGCTATTTCAACGAGTATTCTGTATGCAACACTTGCCGCAAGGTTTGCAAGGGCTCCTACTATCTCTGTCTAGAATGCAAATATTATGTT CATCTGGACTGCATTCCTTTACCGCGTGTTGTTGAGAATGATTGCCACTCCCGCTACCATTCCCATTACCTCACCCTCAAGGATTGCTTTGTTGAAGACG ACTCGGGCCAGTATTACTGTGAGTTTTGTGAGAAAAAAAGGGATCCAACGTATCCTGTTTACTACTGTGATCAATGCCCTGATCGCCATCCATATCTCGC TCATATTGAATGCCTGATGTCGGAGTTAATGGAAGCAGAGCTCAACTCTGCGAGGACCTCTGCCAAGATGGTTGATGATGGAGATGTAAAGGGTGATACG AAGTGCCTTGCTCTCGTCAAGTACACAACTATCCCACCTGAGAATCAAATTAAGCTTAAAGGTTTCAGGCATGAGCATATCCTGGTCCCTGACAATGAGG AATCAGATGCAAGGAGAACTTACTGTTCTTGGTGCGATGGCAAGATTTTTGGTCCAGGCTATATCTGTCAAGAATGTTCGGGAAACTGGCATATATCATG CGCTAAATCGCCCCCTAAAAAGACACACTTTCTTCACTCACAGCACACCCTAACCATGCTTTATCCTCATTATTTTAAGTACTTTATATGCGATGGCTGT AGAGAATTTTGCCATGATGTTGCTGGTTATCATTGCTATGAGTGCCGCTTCTTCCTTGATATGAAATGTGCTTCTCTACCTGATGATCAGTGCGAGCAAT TGAAGAAGACAGAAAGCAAAACTATATATTTTTGCCACAAGCATAAATTAACAAGAGCCAACTGTGCAAAAGGAATTAAAGAGAAATGCAAGGTCTGTCA GGTCCGTATCTCCGGTGCAACATATTGCTGCATTAACTGCAACTTCTTCCTTCATGAATCCTGCCTCGAAACACCACAAGAAATACAACACCAGTATCAC CTGCAGCACCCCCTTCTTGGTCGGGACTTTGATGGAAATCCAAAAAACTGCAGAGCCTGCAATCTGCAAATTTGGGATATTGCCTATTACTGTGATATCT GCGAATTTGCTCTCCATTTTACATGTGCTACTTACTTAACTTCCACTCTCAAACATGAGTTCCACCATGAGCACACACTCTTTTCCTTCGTAGCATGGGA TCTAGGGGATCAGGGCTTTATCCAGTCGCTAGAACCACAACCTTCAAAAGGCAATTTTTGTTGCGAGACCTGTGGAAATGATTGCACTGATTCCTTCTAT CGTTGTGTTGAATGCAACATTAATCGACATCTTGAGTGCATTCCATTGCCATTTAAAGTTCAGCATGAAGACCATTCGGATCCTCTTACTCTCATGGAAA ATGTAGTCGAAGATGATTATGGAGAATATTACTGTGAGATTTGCCGGGATAAAAGGAACCCAAATCATCCTGTTTATTGCTGCAAGATGTGTAAGGATAA CTGGTTCATTGCTCATATTGGATGCGTGATTAAAGAGGGAGACACTTTATTAGAAATACTGGAATGGTGGAATAAAGATTTCGGATCAGACTATGAGGAG ACCTCTAGCAAGGAGGATGATGGGACTTCCCTTGCCAGTCATTCTGATCTAGAGAGTTATGCAATGGGAGAGCATAATACGGAAGTCTCTGGAATTACTG AACTTGATTAA
AA sequence Show only first row Show all	>Potri.019G020100.1 pacid=42774656 polypeptide=Potri.019G020100.1.p locus=Potri.019G020100 ID=Potri.019G020100.1.v4.1 annot-version=v4.1 MEVGQFSHESHGHALTFYEESEEKLKKIAKLSGEEIGSPLCYGCFETIHGPAYFCEICGDFWLHKSCFELPSELPKHSLHSIHPLTLIVRPPSLAGFFVC DGCRDMSPGFAFHCKACRFNLDVKCAISTDGEDLRSRKGVKNTEIPYFGDEHLLVSFNAKQEVEKTCTGCQLLLSGPAYGCLDCEFYLHESCKDMPSEIQ HPYHPPHPLRAQVAEYGSECDACHMPIRKVFYRCSECDFNLHILCANKSLQVASSLKHKGHEHNLYYFVASYFNEYSVCNTCRKVCKGSYYLCLECKYYV HLDCIPLPRVVENDCHSRYHSHYLTLKDCFVEDDSGQYYCEFCEKKRDPTYPVYYCDQCPDRHPYLAHIECLMSELMEAELNSARTSAKMVDDGDVKGDT KCLALVKYTTIPPENQIKLKGFRHEHILVPDNEESDARRTYCSWCDGKIFGPGYICQECSGNWHISCAKSPPKKTHFLHSQHTLTMLYPHYFKYFICDGC REFCHDVAGYHCYECRFFLDMKCASLPDDQCEQLKKTESKTIYFCHKHKLTRANCAKGIKEKCKVCQVRISGATYCCINCNFFLHESCLETPQEIQHQYH LQHPLLGRDFDGNPKNCRACNLQIWDIAYYCDICEFALHFTCATYLTSTLKHEFHHEHTLFSFVAWDLGDQGFIQSLEPQPSKGNFCCETCGNDCTDSFY RCVECNINRHLECIPLPFKVQHEDHSDPLTLMENVVEDDYGEYYCEICRDKRNPNHPVYCCKMCKDNWFIAHIGCVIKEGDTLLEILEWWNKDFGSDYEE TSSKEDDGTSLASHSDLESYAMGEHNTEVSGITELD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21840			Cysteine/Histidine-rich C1 dom...		Potri.019G020100 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	1.41	0.8425
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009500 [exp]	8.48	0.8004
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.010G181400 [exp]	8.94	0.8083
AT3G26750			unknown protein		Potri.007G019733 [exp]	13.22	0.7652
AT4G27190			NB-ARC domain-containing disea...		Potri.001G443700 [exp]	14.69	0.7816
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	15.49	0.8120
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.010G153800 [exp]	19.33	0.8059
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	20.19	0.7435
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	23.36	0.8000
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.005G069800 [exp]	26.45	0.7159

Compare expression of checked genes

Potri.019G020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.