Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08600 1610 / 0 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT3G19210 267 / 3e-74 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G18760 203 / 8e-53 CHR8 chromatin remodeling 8 (.1) AT5G63950 201 / 4e-52 CHR24 chromatin remodeling 24 (.1) AT2G21450 186 / 5e-48 CHR34 chromatin remodeling 34 (.1) AT5G19310 187 / 7e-48 Homeotic gene regulator (.1) AT2G25170 185 / 6e-47 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G13370 184 / 1e-46 CHR5 chromatin remodeling 5 (.1) AT1G05490 173 / 2e-43 CHR31 chromatin remodeling 31 (.1) AT5G66750 171 / 2e-43 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048500 [exp] 2464 / 0 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G141500 [exp] 261 / 3e-72 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.017G012400 [exp] 216 / 1e-57 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.005G066600 [exp] 206 / 9e-54 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.005G226500 [exp] 202 / 2e-52 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 201 / 3e-52 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.006G262200 [exp] 187 / 1e-47 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.007G026700 [exp] 184 / 1e-47 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.009G047800 [exp] 187 / 3e-47 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032785 [exp] 1764 / 0 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10003572 [exp] 1763 / 0 AT1G08600 1560 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10019866 [exp] 263 / 2e-72 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10014047 [exp] 261 / 8e-72 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10003543 [exp] 219 / 9e-58 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10033909 [exp] 217 / 6e-57 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10015690 [exp] 209 / 1e-54 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 206 / 1e-53 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10022423 [exp] 176 / 8e-44 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 175 / 1e-43 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.019G021500.5 pacid=42773791 polypeptide=Potri.019G021500.5.p locus=Potri.019G021500 ID=Potri.019G021500.5.v4.1 annot-version=v4.1 ATGGAGGAAAAAAATGAGGAAGTTCAGGACATTGACAGTGCTTCAAGTGATTCATTTATTGATGATGATGAGAATGATGAGCCTTCTACATCTGGACAAG ATGATGGGACCCGTATTCAGGTGCCTTTGACCGATCAAGAAGTAGAGGAATTGGTTGCCGAGTTCTTGGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGA AGCACTGGAAAAAGAGTCTCTTGCAAAAGTTGAGAGTGATGTGAGAGAGGAGTTGGCACAAAGTCTTCAGGGTGATGATCTGGAGGCGGCTGTTGAAGAT GAGATGACAACTTTCAGGGAAGAGTGGGAAAATGTGCTTGATGAGCTTGAGACTGAGAGCTACCATTTGTTGGAACAACTTGATGGATCTGGTATTGAGC TACCAAGCCTTTATAAGTGGATTGAAAGTCAGGCTCCTAATGGTTGCTGCACTGAAGCTTGGAAAAGGAGGGCACACTGGGTGGGATCTCAGGTGACCAA GGAAACTATTGATTCAGTTGCTGATGCTGAGAAATATCTTCAAATCCATAGGCCTGCTAGACGACGTCATGGTAAATTATTGGAGGAGGGTGCAAGTGGA TTTCTGCAGAAAAAACTTTCCATGGATGGAAGTGAGGCAATTGTAGAAAATGGAGAAGTAGATTGGGTCTCTATGAAGAAACTATTCTCAACTAGCAGTG GGGAGGATGTTGCTTCATTTGGTAGTAAGCATTGGGCTTCTGTTTACCTGGCCAATACTCCCCAGGAAGCTGCACTTATGGGACTTAAATTTCCCGGAGT CAATGAGGTTGAGGAGATTGAAGACATTGATGAGGATTCCATTGATCCATTTGTTGCAGAGGCCGTGGCAAATGAAAAGGAACTTGTTCTTTCAGAGGAA CAGAGAAAAAGTTATAGAAAGGTCAAAGAGGAAGATGATGCAAAGATTGATCAGAAACTTCAACTTCATTTGAAACAGAGGAGACAGCGTAAGAGATGTA AACAGGGTGTTAGCTCAGTCATCCAGGAAATGGGAAGGAACATGGATGAGCCACTGCCTCTGGATGACGATTACAATGAAGTCACATGCCAAGATTTGAA GAAAGACAAGCTTTCTGTAGACCTTGTAATGGAACATTCTACAGGTAAGAGCAATTCAGTTTTCCCAGAGTCTGCGCTGCCTGATGCCACTGAACCTAGA AGGTCCAAGCGTCCAAATGAGAGTGAGGATCTAAGCATCAATGATAAGAAGATTCGGACTGTTATCATAGACAGTGATGATGAAGCGGGCATTCTGGAGG ATAAATCAGTACACAACATTAAAGTTGAGGATCAATCAACTTTGCAAGAGAACACTGGGGACCCTACAACTGATTGCAATCCTTCACAGGGTTCAAATGA GAAGTTTCTGTGCACTGCCTGTGATAAAGTGGCTGTTGAAGCGCACTCACATCCACTTTTGAAAGTAATAGTTTGCAAAGACTGTAAATTCTTAATGGAG GAAAAGATGCATGCGAAGGATCCTGACTGTTCTGAGTGTTACTGTGGATGGTGTGGACGGAACATTGAATTGGTAAGTTGTAAGTCATGCAGAACATTAT TCTGCACTGCTTGTATAAAACGGAACATTGGTGAAGAGTACTTGCCTAAGGTTCCAGCTTCTGGTTGGCAATGTTGTTGTTGCTCTCCAAGTCTGCTACA AATGTTTACATTACAGTTAGAGAAAGCCGTGGGGTCTGGCGATACAATGATTACGAGCTCTGATAGTGATTCAGAGTCCTCAGATACAGATGGTGGTGTT ACAATCAGATCTAAGAGAAAGAAGAAAAAGAAGATTAGAAGGATCATTGACGATGCTGAATTAGGAGAAGAGACCAAGAGAAAAATTGCTATTGAAAAGG AACGTCAAGAACGCTTGAAATCCCTGAAAGTACAGTTTTCTGACAAATCCAAGATGATCAATCCTGCAAGCTGCAGTGGAAACTTAACTGAAGGTGCTAG TGTTGAAGTGCTTGGTGATGCCACAACAGGTTATATTGTGAATGTCGTGAGGGAAAAAGGTGAAGAAGCTGTGAGGATTCCTCCAAGCATTTCGTCTAAA TTGAAAGCCCATCAGGTGACAGGGATAAGATTTTTGTGGGAAAATATTATACAGTCAATTGGAAAAGCAAGGTCTGGTGATAAAGGTCTTGGTTGCATTT TAGCGCATATGATGGGCCTTGGTAAAACTTTTCAGGTCATAGCTTTTCTGTACACTGCCATGAGAAGTGTTGATCTGGGTTTGAGAACAGTGCTCCTTGT GACTCCTGTGAATGTGCTGCATAACTGGCGCAAGGAGTTCATGAAGTGGACACCTTCAGAAGTAAAACCACTCCGTGTTTTCATGCTGGAGGATGTGTCG AGGGAGAGAAGAGCGGAATTGCTTGCAAAGTGGAGAGCTAAAGGTGGTGTATTCTTGATTGGCTACTCTGCCTTTCGGAACTTAACCCTTGGAAAGAATG TGAAGGAACCAAAATTGGCTAGAGAAATTTGTAATGCCTTGCAGGATGGACCTGATATACTTGTTTGTGATGAAGCTCATATAATCAAGAATACCAGGGC TGATACAACCCAAGCACTGAAACTCGTGAAATGCCAGAGAAGGATAGCATTAACTGGATCACCTCTTCAGAACAATCTAATGGAGTATTATTGTATGGTT GATTTTGTAAGAGAAGGTTTTCTTGGCAGCAGCCACGAGTTCAGGAATCGTTTCCAAAATCCTATAGAAAATGGACAACATACTAATTCAATGGTTGACG ATGTAAAGATCATGAACCAAAGATCTCATATTCTCTATGAACAATTGAAAGGGTTTGTTCAAAGAATGGACATGAGTGTGGTGAAGAAAGACCTGCCACC CAAAACAGTATTTGTAGTGGCTGTAAAGCTTTCTCCATTACAGAGGAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACAAATGGCAGGGTTTCG AATGAAAAGATGAGGAAGAGCTTTTTTGCTGGTTACCAGGCATTGGCTCAGATATGGAACCATCCTGGAATATTGCAATTGAGGAAAGGTAGAGATTACA TTGGCCGTGAGGACAATGTTGAGAATGTTCTTGCAGATGACTGCTCTAGTGATGAAAATGTAGATTACAATACAATTGTTGGAGAGAAGTCAAGGAATCA AAATGATTTCGTTCAAGGGAAAAGTGATGATGGATTTTTTCAAAAGGATTGGTGGAATGATCTTCTGCATGAAAATAATTATAAAGTGATTGATTATAGT GGCAAAATGGTATTGCTGCTTGACATTTTAGTCATGTCTTCTAATGTGGGTGATAAGACATTGGTTTTTAGCCAGAGCATACCCACTTTAGATCTTATAG AGCTTTATCTTTCAAGATTAACTCGACATGGGAAAAAGGGAAAATTCTGGAGAAAAGGAAAAGACTGGTATAGGCTAGATGGAAGAACAGAGAGCTCTGA AAGGCAAAGGTTGGTTGAGAGGTTCAATGATCCCGAGAATAAGCGGGTCAAATGTACTTTGATTTCTACTAGGGCTGGTTCTCTCGGGATTAATCTCTAT GCTGCTAACCGGGTGATTATTGTTGATGGTTCTTGGAATCCGACATATGATCTTCAGGCCATATATCGGGCTTGGAGGTATGGCCAGACTAAGCCAGTGT TTGCTTACAGATTAATGGCACATGGAACCATGGAGGAAAAAATCTATAAGCGTCAGGTCACAAAGGAAGGACTTGCTGCAAGGGTGGTTGATAGACAACA AGTATATAGGACTATGTCCAGAGAAGAAATGTTGCATCTTTTTGAATTTGGTGATGATGAGAAATCTGACACACTAAATGACATTGGCCAAGAATATAGA CATGCAGATACCAGGAATGTTACCTGCCAAACCGTAAATTCTTTGAAAGAGAACATTCCTTGTTCTCAAGGAAGCTGCTCATCTGATAAGTTAATGGAAA GCTTGCTTGACAAGCACCGTCAGAGGTGGATTTTTGATTACCATGAACATGAGACCCTTTTGCAAGAGAATGAAGAGGAAAAACTAACAAAGGAGGAGCA AGACATGGCTTGGGAAGTATACAAGAGATCATTGGAATGGGAAGAAGTGCAGCGAGTTTCCGTTGATGACTCTACATTTGAGCGAAAGCCACAAATGTCA AACGGGGCATCTTCTGCCCTAGACACTAGCAGCATACCTGTGCCAAGCATGGCCCCTCCTGCATCTGAGGCTTCCAATGTAGCACCATCCAAGAGCATTT TAAGGAGTCGTGTGGTGCAGCGGAAATGCACTAATCTCTCTCATTTGCTAACCCTAAGAAGTCAGGGCACAAAAGCTGGGTGCACTACCGTCTGCGGGGA ATGTGCCCAGGAGATAAGCTGGGAAGATCTGAATCGGGAGGGTAAGGCAGCACGGTAA
AA sequence Show only first row Show all	>Potri.019G021500.5 pacid=42773791 polypeptide=Potri.019G021500.5.p locus=Potri.019G021500 ID=Potri.019G021500.5.v4.1 annot-version=v4.1 MEEKNEEVQDIDSASSDSFIDDDENDEPSTSGQDDGTRIQVPLTDQEVEELVAEFLEVESKAAEAQEALEKESLAKVESDVREELAQSLQGDDLEAAVED EMTTFREEWENVLDELETESYHLLEQLDGSGIELPSLYKWIESQAPNGCCTEAWKRRAHWVGSQVTKETIDSVADAEKYLQIHRPARRRHGKLLEEGASG FLQKKLSMDGSEAIVENGEVDWVSMKKLFSTSSGEDVASFGSKHWASVYLANTPQEAALMGLKFPGVNEVEEIEDIDEDSIDPFVAEAVANEKELVLSEE QRKSYRKVKEEDDAKIDQKLQLHLKQRRQRKRCKQGVSSVIQEMGRNMDEPLPLDDDYNEVTCQDLKKDKLSVDLVMEHSTGKSNSVFPESALPDATEPR RSKRPNESEDLSINDKKIRTVIIDSDDEAGILEDKSVHNIKVEDQSTLQENTGDPTTDCNPSQGSNEKFLCTACDKVAVEAHSHPLLKVIVCKDCKFLME EKMHAKDPDCSECYCGWCGRNIELVSCKSCRTLFCTACIKRNIGEEYLPKVPASGWQCCCCSPSLLQMFTLQLEKAVGSGDTMITSSDSDSESSDTDGGV TIRSKRKKKKKIRRIIDDAELGEETKRKIAIEKERQERLKSLKVQFSDKSKMINPASCSGNLTEGASVEVLGDATTGYIVNVVREKGEEAVRIPPSISSK LKAHQVTGIRFLWENIIQSIGKARSGDKGLGCILAHMMGLGKTFQVIAFLYTAMRSVDLGLRTVLLVTPVNVLHNWRKEFMKWTPSEVKPLRVFMLEDVS RERRAELLAKWRAKGGVFLIGYSAFRNLTLGKNVKEPKLAREICNALQDGPDILVCDEAHIIKNTRADTTQALKLVKCQRRIALTGSPLQNNLMEYYCMV DFVREGFLGSSHEFRNRFQNPIENGQHTNSMVDDVKIMNQRSHILYEQLKGFVQRMDMSVVKKDLPPKTVFVVAVKLSPLQRKLYKRFLDVHGFTNGRVS NEKMRKSFFAGYQALAQIWNHPGILQLRKGRDYIGREDNVENVLADDCSSDENVDYNTIVGEKSRNQNDFVQGKSDDGFFQKDWWNDLLHENNYKVIDYS GKMVLLLDILVMSSNVGDKTLVFSQSIPTLDLIELYLSRLTRHGKKGKFWRKGKDWYRLDGRTESSERQRLVERFNDPENKRVKCTLISTRAGSLGINLY AANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVYRTMSREEMLHLFEFGDDEKSDTLNDIGQEYR HADTRNVTCQTVNSLKENIPCSQGSCSSDKLMESLLDKHRQRWIFDYHEHETLLQENEEEKLTKEEQDMAWEVYKRSLEWEEVQRVSVDDSTFERKPQMS NGASSALDTSSIPVPSMAPPASEASNVAPSKSILRSRVVQRKCTNLSHLLTLRSQGTKAGCTTVCGECAQEISWEDLNREGKAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	0	1
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	1.00	0.8806	CHR923
AT2G19390			unknown protein		Potri.018G056400 [exp]	3.87	0.8123
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	6.00	0.8113
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	6.00	0.8327
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	6.24	0.7817
AT2G26790			Pentatricopeptide repeat (PPR)...		Potri.004G066600 [exp]	6.32	0.7909
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	6.32	0.8063
AT3G22430			unknown protein		Potri.009G147201 [exp]	6.85	0.7389
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	7.00	0.8075
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	8.24	0.8287

Compare expression of checked genes

Potri.019G021500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.