Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11480 309 / 2e-103 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 300 / 2e-99 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G38020 299 / 2e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 295 / 5e-98 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19640 289 / 3e-95 JMT jasmonic acid carboxyl methyltransferase (.1) AT5G04380 283 / 4e-93 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 268 / 2e-87 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 249 / 4e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G36470 229 / 3e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55250 164 / 7e-47 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G022400 [exp] 653 / 0 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 626 / 0 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022402 [exp] 586 / 0 AT3G11480 261 / 1e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022200 [exp] 466 / 5e-166 AT5G04370 227 / 1e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G021300 [exp] 350 / 2e-119 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 300 / 6e-100 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.005G045900 [exp] 276 / 2e-90 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.007G021400 [exp] 237 / 4e-75 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016102 [exp] 182 / 3e-54 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025993 [exp] 292 / 2e-95 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041380 [exp] 257 / 5e-83 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 241 / 9e-77 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10036550 [exp] 236 / 8e-75 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 237 / 1e-74 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 233 / 2e-73 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 235 / 9e-72 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 225 / 1e-70 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 169 / 6e-49 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10032569 [exp] 140 / 2e-38 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03492 [poplar] [flax] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.019G022002.1 pacid=42773250 polypeptide=Potri.019G022002.1.p locus=Potri.019G022002 ID=Potri.019G022002.1.v4.1 annot-version=v4.1 ATGATGGTGGAAAGCGTTCTTTGCATGAATCCAGGAGATGGTGAAACCAGCTACGCCAAGAATTCATTCCTTCAAAAAACAGTGCTATCAAAAGCTAGGC CAATCCTAGAAGATACCATCAAGGACATGTTCAGCACCGCCCTTCCCACTAGCTTCAAACTAGCAGACTTGGGCTGCTCTTCAGGACCCAATACTCTCTT GTTCGTTTCTGAAATCATGGACGTCATTTATGAGCTTTGCCAACAACTGAACTGTAAACTGCCCGAATTTCAGGTGTTTCTGAATGACCTTCCAGGGAAT GATTTCAATGCTGTTTTCAAGTCGCTGCCATTTTTCTACGACAAGTTTGGAAAAGAAAAGGGAGACTTGTATGGACAGCACTGCTTCATATCAGGAGTAC CTGGTTCTTTCTATCACAGGCTCTTCCCAAGCAAGAGTTTGCATTTCTTTCATTCCTCTTACAGCCTACACTGGCTTTCTAAGGTGCCAGAAGGTATATC AAATAACAAGGGGAACATATACATGGCAAAGGCAAGTCCTCCTAATGTATTTAAAGCTTACTTGGAGCAATTCCAGAAGGATTTCTCCTTGTTTCTGCGC TTACGCTCAGAGGAAATAATACAAGGAGGACGTGTAGTTCTTACATTCCTCGGCAGGAGTAGTGACGACCCAAGAAGCAAAGATTGCTGTCTTTCTTGGG AGCTGCTAGCAAAGTCACTGCTAGACTTGGCAGCAAAGGGACTTGTTGTAGAGGCCGATATCGATACCTTCAATCTGCCATATTATAATCCTTACGAAGG AGAAGTGAGGGAAATTATCGAAATGGAGGGATCATTCGATATTAACAAGCTAGAAACTTTTGCTATTAACTGGGATGCTAATGATGATATCAGCAACAAA AATTTTGTGTTTGACAAGGACCAATGTGGACGAAATGTGGCAAATATTGTAAGAGCAGTTGCAGAACCGATGTTGGTTAGTCATTTTGGAGATGAAATAA TGGATGAATTGTTCAAGAGGTACGCAGAGCATGTAGGTGAACATCTGTGCGTGGAGAAGACAAAACACATAAACATAGTCCTCACAATGACAAAGAAGGA GTAG
AA sequence Show only first row Show all	>Potri.019G022002.1 pacid=42773250 polypeptide=Potri.019G022002.1.p locus=Potri.019G022002 ID=Potri.019G022002.1.v4.1 annot-version=v4.1 MMVESVLCMNPGDGETSYAKNSFLQKTVLSKARPILEDTIKDMFSTALPTSFKLADLGCSSGPNTLLFVSEIMDVIYELCQQLNCKLPEFQVFLNDLPGN DFNAVFKSLPFFYDKFGKEKGDLYGQHCFISGVPGSFYHRLFPSKSLHFFHSSYSLHWLSKVPEGISNNKGNIYMAKASPPNVFKAYLEQFQKDFSLFLR LRSEEIIQGGRVVLTFLGRSSDDPRSKDCCLSWELLAKSLLDLAAKGLVVEADIDTFNLPYYNPYEGEVREIIEMEGSFDINKLETFAINWDANDDISNK NFVFDKDQCGRNVANIVRAVAEPMLVSHFGDEIMDELFKRYAEHVGEHLCVEKTKHINIVLTMTKKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022002 [exp]	0	1
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	3.74	0.9506	Pt-ATML1.1
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022402 [exp]	4.47	0.9261
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	5.29	0.9300
					Potri.017G142923 [exp]	6.92	0.9331
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.001G169100 [exp]	7.74	0.9223
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.015G005900 [exp]	8.66	0.9322
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Potri.015G082200 [exp]	9.79	0.8887
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004400 [exp]	9.89	0.8657
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	10.48	0.9239
AT1G14760		KNATM	KNOX Arabidopsis thaliana mein...		Potri.012G043400 [exp]	10.95	0.9080

Compare expression of checked genes

Potri.019G022002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.