Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11480 261 / 1e-84 BSMT1, ATBSMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38020 259 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66430 258 / 2e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04370 256 / 4e-82 NAMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G19640 244 / 1e-77 JMT jasmonic acid carboxyl methyltransferase (.1) AT5G04380 243 / 3e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G21950 233 / 2e-73 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G14060 225 / 8e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G36470 199 / 2e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55250 138 / 3e-37 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G022002 [exp] 571 / 0 AT3G11480 309 / 3e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022400 [exp] 560 / 0 AT3G11480 311 / 4e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022000 [exp] 548 / 0 AT3G11480 300 / 7e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G022200 [exp] 446 / 8e-158 AT5G04370 227 / 1e-71 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G021300 [exp] 288 / 3e-95 AT3G11480 318 / 1e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G230100 [exp] 271 / 1e-88 AT1G19640 389 / 1e-134 jasmonic acid carboxyl methyltransferase (.1) Potri.005G045900 [exp] 233 / 2e-73 AT1G19640 271 / 3e-88 jasmonic acid carboxyl methyltransferase (.1) Potri.007G021400 [exp] 204 / 2e-62 AT4G36470 469 / 4e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G168166 [exp] 158 / 5e-47 AT5G66430 133 / 6e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025993 [exp] 232 / 3e-72 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041380 [exp] 209 / 2e-64 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024271 [exp] 209 / 2e-64 AT1G19640 315 / 2e-105 jasmonic acid carboxyl methyltransferase (.1) Lus10024671 [exp] 197 / 2e-59 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041776 [exp] 189 / 1e-56 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 181 / 2e-53 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 180 / 4e-53 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 183 / 4e-52 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 137 / 5e-37 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10021802 [exp] 112 / 2e-28 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03492 [poplar] [flax] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.019G022402.1 pacid=42774025 polypeptide=Potri.019G022402.1.p locus=Potri.019G022402 ID=Potri.019G022402.1.v4.1 annot-version=v4.1 ATGATGGTGGAAAGCGTTCTTCGCATGAATCCAGGAGATGGTGAAACCAGCTACGCCAAGAATTCATTCCTTCAACTCTCTCTCTCTCTCTTAACACCTT ATTTCATAAAAATTAAAACAGTGCTATCAAAAGCTAGGCCAATCCTAGAAGATACCATCAAGGACATGTTCAGCACCGCCCTTCCCACTTGCTTCAAACT AGCAGACTTGGGCTGCTCTTCAGGACCCAATACTCTCTTGCTCGTTTCTGAAATCATGGACGTCATTTATGAGCTTTGCCAACAACTGAACTGTAAACTG CCCGAATTTCAGGTGTTTCTGAATGACCTTCCAGGGAATGATTTCAATGCTGTTTTCAAGTCGCTGCCATTTTTCTACGACAAGTTTGGAAAAGAAAAGG GAGACTTGTATGGACAGCACTGTTTCATATCAGGAGTACCTGGTTCTTTCTATCACAGGCTCTTCCCAAGCAAGAGTTTGCATTTCTTTCATTCCTCTTG CAGCCTACACTGGCTTTCTAAGGTTATGCAAGTCCTCGATCCTAATGTATTTAAAGCTTACCTGGAGCAATTCCAGAAGGATTTCTCCTTGTCTCTGCGC TTACGATCAGAGGAAATAATACAAGGAGGACGTGTAGTTCTTACATTTATCGGCAGGAGTATTGAGGATCCTAGAAGCAAAGATTGCTGTCTTTATTGGG AGCTGCTAGCAAAGTCACTGCTAGACTTGGCAGCAAAGGGACTTGTTGTAGAGGCCGATATCGATACCTTCAATCTGCCATACTATAATCCTTACGAAGG ACAAGTGAGGGAAATTATCGAAATGGAGGGGTCATTCGATATTAATAAGCTAGAAACTTTTGCCATTAACTGGGATGCTAATGATGATATCAACAACAAA AATTTTGTGTTTGACAAGGACCAATGTGGACGAAATGTGGCAAATATTGTAAGAGCAGTTGCAGAACCGATGTTGGTTAGTCATTTTGGAGATGATATAA CGGATGAATTGTTCAAGAGGTACGCAGAGTATGTAGGTGAACATCTGTGCGTGGAGAAGACGAAACACATAAACATAGTCCTCACAATGACAAAGAAGGA GTAG
AA sequence Show only first row Show all	>Potri.019G022402.1 pacid=42774025 polypeptide=Potri.019G022402.1.p locus=Potri.019G022402 ID=Potri.019G022402.1.v4.1 annot-version=v4.1 MMVESVLRMNPGDGETSYAKNSFLQLSLSLLTPYFIKIKTVLSKARPILEDTIKDMFSTALPTCFKLADLGCSSGPNTLLLVSEIMDVIYELCQQLNCKL PEFQVFLNDLPGNDFNAVFKSLPFFYDKFGKEKGDLYGQHCFISGVPGSFYHRLFPSKSLHFFHSSCSLHWLSKVMQVLDPNVFKAYLEQFQKDFSLSLR LRSEEIIQGGRVVLTFIGRSIEDPRSKDCCLYWELLAKSLLDLAAKGLVVEADIDTFNLPYYNPYEGQVREIIEMEGSFDINKLETFAINWDANDDINNK NFVFDKDQCGRNVANIVRAVAEPMLVSHFGDDITDELFKRYAEYVGEHLCVEKTKHINIVLTMTKKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022402 [exp]	0	1
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022002 [exp]	4.47	0.9261
AT4G31980			unknown protein		Potri.003G206301 [exp]	5.29	0.8852
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.002G157600 [exp]	12.40	0.8311
AT1G03670			ankyrin repeat family protein ...		Potri.019G101500 [exp]	13.52	0.9100
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	17.94	0.8882
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Potri.005G214100 [exp]	18.54	0.8880
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.019G128200 [exp]	20.78	0.8942
AT3G50180			Plant protein of unknown funct...		Potri.016G039866 [exp]	36.19	0.8999
					Potri.017G142923 [exp]	36.63	0.8771
AT5G07040			RING/U-box superfamily protein...		Potri.001G032300 [exp]	49.82	0.8858

Compare expression of checked genes

Potri.019G022402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.