Plant FIBer expression Database

Potri.019G022700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G32470 756 / 0 Haem oxygenase-like, multi-helical (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G049300
[exp]
1006 / 0 AT5G32470 766 / 0.0 Haem oxygenase-like, multi-helical (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042514
[exp]
839 / 0 AT5G32470 727 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021977
[exp]
838 / 0 AT5G32470 728 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10027948
[exp]
785 / 0 AT5G32470 700 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10000819
[exp]
637 / 0 AT5G32470 575 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021976
[exp]
105 / 3e-26 AT5G32470 94 / 3e-23 Haem oxygenase-like, multi-helical (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0230 HO PF03070 TENA_THI-4 TENA/THI-4/PQQC family
CL0137 HAD PF12710 HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Potri.019G022700.1 pacid=42774734 polypeptide=Potri.019G022700.1.p locus=Potri.019G022700 ID=Potri.019G022700.1.v4.1 annot-version=v4.1
ATGCGCCTACTCTTGTTTACTTCTCCAAACCCAATCAAAACCTCTTCATCACTATATTTCCTCAACTCGCTCCGATCCAACTTAACCAAACGCACCTTGC
CAACTCGGAGATCTTTCATCCCTGCAAGAATGGCAATCCCTCCACGATCAATAGCATCAGCGCCATCTTGCACTACAACATCAGGCAGAAGTAACATCAA
CATTGAAGAGGGTCTTGCTAGTAAATTCTGGATCAAGTTTAGAAGAGAATCCGTTTTTGCTATGTACACTCCTTTTGTCATCTCTTTGGCTTCTGGCACT
CTCAAGATTGATTCTTTCAGGCATTATATCTCTCAAGATTCTCACTTTCTCAAATCTTTTGCTCATGCGTTTGAATTAGCGGAAGAGTGTGCTGATGATG
ATGAAGCAAAGCTAGCAATCTCCGAGTTGAGGAAGGGTGTCTTAGAGGAGCTGAAGATGCACAATTCATTTGTACAGGAATGGGGTATAGACCCAGGTAA
AGAGGGGACTATCAATTCTGCTACTGTAAAATACACAGATTTCTTGTTGGCTACAGCTTCTGGGAAGGTTGAAGGAGTGAAAGGTCTTGGTAAACTTGCA
ACTCCTTTTGAAAGAACAAAAGTTGCAGCCTATACTCTGGGTGCCATGACACCTTGCATGCGGCTGTATTCCTTTCTAGGCAAGGAACTCCAGGCAGTTT
TAGATCCGGAGGAAGATGGGCACCCTTACAAGAAGTGGATTGACAGTTATTCGTCTGAGAGTTTTCAGGCATCAGCTCTGCAAACTGAAGACTTGCTGGA
TAAACTTAGTGTCTCCTTGACAGGCGAGGAGCTTGACATCATTGAAAAGCTTTATCACCAGGCCATGAAACTTGAAATAGAATTCTTCCTTGCTCAGCCA
ATTGCTCAGACAACTTTAGCTCCCCTGACAAAAGGGCATAACCCTGAAGAAGACCGGCTTGTCATATTTTCTGATTTTGATTTGACATGCACTGTTGTTG
ACTCTTCTGCCATTTTGGCAGAAATTGCAATACTAACAGCACCAAAATCTGATGTGGTTCAACCTGAGACTCAAATTGCTCGAATGTCATCAGCTGATCT
GAGGAACACATGGGGTCTTCTTTCTGGACAGTACACGGAAGAGTATGAACAATGTATTGAAAGCATTATGCCATCTGCAAAAGTGGAATTCAACTATGAA
GCTCTTTGTAAAGCACTTGAACAACTTTCAGACTTTGAGCGAAGGGCAAATTCTAGAGTGATTGATTCTGGAGTTCTCAAAGGTTTGAATCTTGAAGATG
TAAAACGAGCGGGTGAACGTTTGATTCTTCAGGATGGTTGCATTGGTTTCTTTCAGAAAATTGTGAAGAATGAAAATTTGAACACTAATGTCCATGTGCT
CTCATACTGCTGGTGTGGTGATCTCATCAGATCAGCTTTCTCCTCAGGGGGTTTGGATGCTCTAAATATTCATGCAAATGAGTTAATTTTTGAAGAATCA
ATCTCCACGGGAGAGATTGTTAAAAAGGTGGAATCTCCCATGGACAAAGCTCAAGCTTTCAATGACATTTTAAAGAATTACAGCAGTGACAGAAAGAACT
TGACTGTTTACATTGGAGATTCAGTTGGTGACTTGCTTTGTCTACTTCAGGCAGATATTGGTATTGTAGTTGGATCTAGTGCAAGCTTAAGGAGCGTGGG
AAGTCAATATGGTGTTTCTTTTGTACCACTGTTCCCTGGCTTGGTAAGAAAACAGAAAGAATCTGATGGAGAATCTCCTAATTGGAAAGGGCTATCTGGC
ATACTATATACAGTCTCCAGTTGGTCAGAAATACATGCCTTCATTTTGGGGTGGTAG
AA sequence
>Potri.019G022700.1 pacid=42774734 polypeptide=Potri.019G022700.1.p locus=Potri.019G022700 ID=Potri.019G022700.1.v4.1 annot-version=v4.1
MRLLLFTSPNPIKTSSSLYFLNSLRSNLTKRTLPTRRSFIPARMAIPPRSIASAPSCTTTSGRSNINIEEGLASKFWIKFRRESVFAMYTPFVISLASGT
LKIDSFRHYISQDSHFLKSFAHAFELAEECADDDEAKLAISELRKGVLEELKMHNSFVQEWGIDPGKEGTINSATVKYTDFLLATASGKVEGVKGLGKLA
TPFERTKVAAYTLGAMTPCMRLYSFLGKELQAVLDPEEDGHPYKKWIDSYSSESFQASALQTEDLLDKLSVSLTGEELDIIEKLYHQAMKLEIEFFLAQP
IAQTTLAPLTKGHNPEEDRLVIFSDFDLTCTVVDSSAILAEIAILTAPKSDVVQPETQIARMSSADLRNTWGLLSGQYTEEYEQCIESIMPSAKVEFNYE
ALCKALEQLSDFERRANSRVIDSGVLKGLNLEDVKRAGERLILQDGCIGFFQKIVKNENLNTNVHVLSYCWCGDLIRSAFSSGGLDALNIHANELIFEES
ISTGEIVKKVESPMDKAQAFNDILKNYSSDRKNLTVYIGDSVGDLLCLLQADIGIVVGSSASLRSVGSQYGVSFVPLFPGLVRKQKESDGESPNWKGLSG
ILYTVSSWSEIHAFILGW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G32470 Haem oxygenase-like, multi-hel... Potri.019G022700
[exp]
0 1
AT1G28240 Protein of unknown function (D... Potri.011G053000
[exp]
4.24 0.8776
AT1G13630 Tetratricopeptide repeat (TPR)... Potri.010G137200
[exp]
9.48 0.8247
AT1G43890 ATRAB-C1, RAB18... RAB GTPASE HOMOLOG 18-1, ARABI... Potri.002G074400
[exp]
11.74 0.8038
AT1G28240 Protein of unknown function (D... Potri.004G044100
[exp]
15.16 0.8572
AT2G35880 TPX2 (targeting protein for Xk... Potri.016G066600
[exp]
16.34 0.8566
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.018G119500
[exp]
21.90 0.8487
AT1G27850 unknown protein Potri.010G056200
[exp]
29.34 0.8430
AT5G18400 Cytokine-induced anti-apoptosi... Potri.005G198900
[exp]
31.46 0.8195
AT5G61840 GUT1, IRX10-L Exostosin family protein (.1) Potri.012G109600
[exp]
35.09 0.8349
AT3G15220 Protein kinase superfamily pro... Potri.011G116300
[exp]
35.09 0.8398

Potri.019G022700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.