Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04310 108 / 9e-28 unknown protein AT2G33250 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063300 [exp] 86 / 3e-19 AT3G04310 88 / 3e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003583 [exp] 161 / 1e-47 AT3G04310 140 / 1e-39 unknown protein Lus10032791 [exp] 138 / 9e-39 AT3G04310 133 / 4e-37 unknown protein Lus10004401 [exp] 71 / 1e-13 AT3G04310 81 / 3e-17 unknown protein Lus10023703 [exp] 65 / 1e-11 AT2G33250 74 / 1e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G023400.1 pacid=42773287 polypeptide=Potri.019G023400.1.p locus=Potri.019G023400 ID=Potri.019G023400.1.v4.1 annot-version=v4.1 ATGGGGACTCACTTTCTTCTCCTACAACTCTCCTTCCCTGCTAAAACAACACCACCATCACTTCCACTTCTAAACCATAATAACCACCAACTCTCCACCG GCAATCATACTAGTAAGCCTTGCGGCCCTCACTGGGCTTGGAAGAATCATGGTCCCACTTCAACTGGACGCTCCAGGTTCAATTTTGAAGATGAGCTCTA TACTGACAGTGGTGATTATGATGATGAGTTTGGATTCAGTGGAACTGGGGAGAAGAGGGTATGGTGGTTTGATGATGATGATGATGATGATGATTGGGAT GATGATTATGAGGAAAATGAGTTCGGGATTTTCAAGATAATTAAAGCTTTTGGTTGGATGATTCCAGCTGTCGCCGTATCATTTCTGTTAGGAACTGACA ACCCAAATGCTTTCTTAATGGCATTAGTAGTTCCATTAGGACAGACTGCCTTGTCACTTGTGATGGATAAAGTATGGGGAACTACGAGCACTAATCCAAA ACGCAGATCGAGAACCAAAACCAGGAAAAAGCCATTTGCTAGAGCTGCCAGCAAAACAAAAAAGACTGAGCCTAAGGCAGGGGAATACAAGACTAATGAA AGAAAAGGGAGTTACCAGTCGTGGGTGGCAACAGATGATGGTTCCAATAAGAAAAATACCAATAGGGCACCCAGTTTTGGTGGATGGGATGATCTAGATA AAGCAAGCAATAAGGCCGCTGGAAAGACAAGTAAAAAGGGAGATGAGCGCCCGCGCCCAAAACAGAATAAAGGTAAATTAAGTAGGAGAGGAAGAGTCAG GGACAGACCACTACTTCTTAGGCTGTTGATTGCTGTTTTCCCATTTTTGGCTTCTTGGAGCAAGTTCCTATTTTAA
AA sequence Show only first row Show all	>Potri.019G023400.1 pacid=42773287 polypeptide=Potri.019G023400.1.p locus=Potri.019G023400 ID=Potri.019G023400.1.v4.1 annot-version=v4.1 MGTHFLLLQLSFPAKTTPPSLPLLNHNNHQLSTGNHTSKPCGPHWAWKNHGPTSTGRSRFNFEDELYTDSGDYDDEFGFSGTGEKRVWWFDDDDDDDDWD DDYEENEFGIFKIIKAFGWMIPAVAVSFLLGTDNPNAFLMALVVPLGQTALSLVMDKVWGTTSTNPKRRSRTKTRKKPFARAASKTKKTEPKAGEYKTNE RKGSYQSWVATDDGSNKKNTNRAPSFGGWDDLDKASNKAAGKTSKKGDERPRPKQNKGKLSRRGRVRDRPLLLRLLIAVFPFLASWSKFLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04310			unknown protein		Potri.019G023400 [exp]	0	1
AT1G51100			unknown protein		Potri.001G417350 [exp]	2.00	0.9431
AT5G37930			Protein with RING/U-box and TR...		Potri.004G072800 [exp]	6.92	0.9390
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	8.94	0.9359
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	13.85	0.9396
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.002G151200 [exp]	17.54	0.9146
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	23.13	0.9341
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.007G000600 [exp]	25.09	0.8979
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	26.85	0.9320
AT5G12040			Nitrilase/cyanide hydratase an...		Potri.006G222900 [exp]	27.56	0.9080
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	28.98	0.9325

Compare expression of checked genes

Potri.019G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.