Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G022400 [exp] 228 / 2e-73 ND / Potri.001G021900 [exp] 167 / 5e-50 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G022100 [exp] 167 / 1e-49 AT1G22220 45 / 4e-05 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G021801 [exp] 156 / 2e-45 ND / Potri.003G203000 [exp] 142 / 2e-40 AT1G22220 52 / 2e-07 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G021500 [exp] 127 / 3e-34 AT1G78100 48 / 6e-06 auxin up-regulated f-box protein 1, F-box family protein (.1) Potri.001G021600 [exp] 125 / 8e-34 AT1G22220 45 / 2e-05 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.003G203500 [exp] 97 / 4e-23 AT4G18380 49 / 2e-06 F-box family protein (.1.2) Potri.001G022601 [exp] 53 / 3e-08 ND /
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.019G023500.1 pacid=42773794 polypeptide=Potri.019G023500.1.p locus=Potri.019G023500 ID=Potri.019G023500.1.v4.1 annot-version=v4.1 ATGAGAAGATCCAAATCAGCCAAGCAATCCCACAACCCTAACATCACTGTAAGAAGATCTGAAAGATTAGCAGACAATTTCAAGAAACTCCCAGATGACT TAATCCTCAAAATCTTGTTTAAGATCCAAGATGATACCAAAACCCTCATTCGCTGTTCCACTGTTTGCAAGAACTTGCATTCCCTCGTCTCCAAAATCGA CACTGTCTCCCTCAAATTCTTATGTCCAAACGAGGGTGATGATGATGATGATGATGATGATGATGTTCTCTTGTGCTCGCAGTCTCATCACCACATTCCA CAAGTAGCGTTCCCTGCCCTCATGAAGGTGTTTGCAAATCTCAACTTTCTTGAAATCAAGCTCTGCTCTTTCCCTTCTTCCTCAAATTTGCATGTGTCCA GGTTGAACTGCATGATTGGTGATTGTGATAGTATCCACTGTGAATTAATTTTCGCTATTCAAGTTGGGGTGTTGTCAAGCACAAGGAGAAGTAGAAATAT ACCTCTGAAATTGAACGGGAAATTCGATACCTCCTTTGCTGAAACAATGATGTTCTTTTTAAAGAAAATGGTGCCGCATTGGCCTAAAACGTTAAAGAAA GTGGTGATTTTGAGTGCGAATATGCAGGGGTCTGGATCGAGAGGGAAGGTTTTTATAGGAGAAGAAGAGCTGGATAATTTTGTTGATTTGATTTCGACTT CGATGGTTTATGAGAGTTGGCTCAACTGGCTTAATAATCCCAAAAATGTAACTTATTGGCGCAAGGACGCACAGAATGATGAGCATTCTTGGCTTAGAGA AAATGTGTGGATTCTTTATGGTTTAGGATTTCCATGGGTGAAGGACAGGGTGACTACTGATATAGTTGTGATGGAAAGTGTTGTGAAGGAGTTATTGGGC GCTTTTGAATGA
AA sequence Show only first row Show all	>Potri.019G023500.1 pacid=42773794 polypeptide=Potri.019G023500.1.p locus=Potri.019G023500 ID=Potri.019G023500.1.v4.1 annot-version=v4.1 MRRSKSAKQSHNPNITVRRSERLADNFKKLPDDLILKILFKIQDDTKTLIRCSTVCKNLHSLVSKIDTVSLKFLCPNEGDDDDDDDDDVLLCSQSHHHIP QVAFPALMKVFANLNFLEIKLCSFPSSSNLHVSRLNCMIGDCDSIHCELIFAIQVGVLSSTRRSRNIPLKLNGKFDTSFAETMMFFLKKMVPHWPKTLKK VVILSANMQGSGSRGKVFIGEEELDNFVDLISTSMVYESWLNWLNNPKNVTYWRKDAQNDEHSWLRENVWILYGLGFPWVKDRVTTDIVVMESVVKELLG AFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.019G023500 [exp]	0	1
AT3G61670			Protein of unknown function (D...		Potri.014G095700 [exp]	2.64	0.8355
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	3.00	0.7908
AT3G12590			unknown protein		Potri.010G207900 [exp]	3.16	0.7977
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Potri.014G056700 [exp]	4.47	0.7578
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	5.47	0.7703
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.013G046700 [exp]	5.65	0.7593
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	8.06	0.7510
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.002G262500 [exp]	9.59	0.7903
AT2G01100			unknown protein		Potri.008G126800 [exp]	11.61	0.7450
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	14.38	0.7296

Compare expression of checked genes

Potri.019G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.