Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04290 537 / 0 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G33370 530 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT4G28780 498 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 495 / 8e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 244 / 9e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 237 / 4e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 236 / 4e-75 SGNH hydrolase-type esterase superfamily protein (.1) AT2G42990 226 / 5e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 224 / 4e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 222 / 1e-69 GLIP7 GDSL-motif lipase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051000 [exp] 667 / 0 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.013G051100 [exp] 561 / 0 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 558 / 0 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 546 / 0 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 545 / 0 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 526 / 0 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 242 / 2e-77 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 240 / 2e-76 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G036300 [exp] 225 / 1e-70 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003106 [exp] 570 / 0 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10003108 [exp] 357 / 6e-123 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 322 / 3e-99 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10004774 [exp] 283 / 7e-95 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 254 / 1e-81 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 251 / 2e-80 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10018641 [exp] 239 / 4e-76 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039877 [exp] 239 / 5e-76 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003579 [exp] 242 / 3e-75 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10016918 [exp] 225 / 2e-70 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.019G024400.2 pacid=42773140 polypeptide=Potri.019G024333.1.p locus=Potri.019G024400 ID=Potri.019G024400.2.v4.1 annot-version=v4.1 ATGTGTAAGGATAGCTCATCATGTTTCATTTCTTTAATTTTAGGGCTTGTAATAACACTAGCAAGTGTTATTCCGGAAGTTGAGGCTAGGGCTTTCTTTG TTTTTGGTGATTCGTTAGTAGATAATGGCAACAATAATTATCTTGCAACCACTGCCCGAGCTGATGCACCGCCGTATGGGGTCGATTATCCAACTCATCG GGCTACTGGACGTTTCTCTAATGGCTTTAACATCCCTGATCTCATCAGTGAGGCAATTGGCTCGGAACCCACATTGCCATACTTGAGTCCTGAGCTCAGG GGAGAAAATCTACTTGTCGGAGCCAACTTTGCCTCTGCTGGAATCGGAATTCTCAATGATACTGGAATTCAGTTTCTCAACATCATCCGAATGGGTCGAC AATTGCAATACTTCCAACAATATCAGCAAAGGGTTAGTGCACTTATTGGACCCGAGCAAGCTCAACGATTGGTCAATCAAGCTCTAGTCCTGATGACCCT AGGCGGCAATGACTTTGTTAACAACTACTACTTGGTGCCCTTTTCTGCAAGATCTCGCCAATTCGCCCTCCCTGATTATGTTGTCTATCTCATCTCCGAG TACCGCAAGATTTTAGTGAGTGTATATGAATTGGGTGCACGTAGGGTTTTGGTGACGGGGACCGGACCATTAGGTTGCGTTCCAGCGGAGAGGGCGATGA GGAGCAGAAATGGAGAATGTGCGGCTGAGCTGCAGAGAGCAGCTGCCATGTTCAACCCACAACTTGTGCAAATGTTAATGGAACTCAATAAGGAAATTGG ATCGGATGTTTTCATCTCTGCCAATGCTTATGAAGCGAACATGGATTTCGTTACTAATCCTCAGGCATATGGATTTGTGACGTCGCAAGTTGCATGCTGT GGACAGGGACGTTTCAATGGGATAGGACTGTGCACTATAGCTTCCAACTTGTGCCCTAACAGAGAAATCTTTGCATTTTGGGATCCATTCCATCCAACTG AGAGAGCTAACAGAATCATTGTTAGCACCATCGTGACTGGCAGCACCAAGTATATGAACCCGATGAATCTCAGCACCATCATCGCCTTGGATTCTATGGT TTAA
AA sequence Show only first row Show all	>Potri.019G024400.2 pacid=42773140 polypeptide=Potri.019G024333.1.p locus=Potri.019G024400 ID=Potri.019G024400.2.v4.1 annot-version=v4.1 MCKDSSSCFISLILGLVITLASVIPEVEARAFFVFGDSLVDNGNNNYLATTARADAPPYGVDYPTHRATGRFSNGFNIPDLISEAIGSEPTLPYLSPELR GENLLVGANFASAGIGILNDTGIQFLNIIRMGRQLQYFQQYQQRVSALIGPEQAQRLVNQALVLMTLGGNDFVNNYYLVPFSARSRQFALPDYVVYLISE YRKILVSVYELGARRVLVTGTGPLGCVPAERAMRSRNGECAAELQRAAAMFNPQLVQMLMELNKEIGSDVFISANAYEANMDFVTNPQAYGFVTSQVACC GQGRFNGIGLCTIASNLCPNREIFAFWDPFHPTERANRIIVSTIVTGSTKYMNPMNLSTIIALDSMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	0	1
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093900 [exp]	1.41	0.9971
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151200 [exp]	2.00	0.9961	SP1.2
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	3.16	0.9834
AT3G52500			Eukaryotic aspartyl protease f...		Potri.009G162400 [exp]	4.47	0.9849
AT1G78170			unknown protein		Potri.005G165300 [exp]	4.89	0.9784
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Potri.001G254100 [exp]	6.70	0.9751
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	6.92	0.9741
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	9.74	0.9725
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.017G112300 [exp]	13.60	0.9638
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Potri.018G074500 [exp]	13.63	0.9460

Compare expression of checked genes

Potri.019G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.