Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33370 549 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G18430 535 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 528 / 0 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT4G28780 498 / 8e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 248 / 2e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 248 / 2e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 238 / 9e-76 SGNH hydrolase-type esterase superfamily protein (.1) AT5G15720 236 / 4e-75 GLIP7 GDSL-motif lipase 7 (.1) AT1G29660 231 / 5e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 231 / 5e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051100 [exp] 591 / 0 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 591 / 0 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 578 / 0 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 544 / 0 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.002G253400 [exp] 536 / 0 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051000 [exp] 531 / 0 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.017G130100 [exp] 261 / 6e-85 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 254 / 3e-82 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G064500 [exp] 234 / 2e-74 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003106 [exp] 516 / 0 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10003108 [exp] 410 / 4e-144 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004774 [exp] 330 / 1e-113 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 328 / 8e-102 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10003579 [exp] 259 / 1e-81 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10039877 [exp] 254 / 1e-81 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10016775 [exp] 253 / 3e-81 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 252 / 6e-81 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10018641 [exp] 249 / 9e-80 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10029958 [exp] 237 / 2e-75 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.019G024700.1 pacid=42773069 polypeptide=Potri.019G024700.1.p locus=Potri.019G024700 ID=Potri.019G024700.1.v4.1 annot-version=v4.1 ATGGCATCTTCATCCATTGTTGGGGTGATTTTCAGTCTTGTTTTGGCACTGAAATATGTTGCTCTACAAGCTGAGGCTCGAGCCTTCTTCGTGTTTGGTG ATTCACTTGTCGATAGTGGCAACAACAACTATCTTGCAACAACTGCCCGAGCAGACTCGCCTCCTTATGGAATAGATTATCCATCTCATCGTCCCACTGG CCGTTTCTCGAATGGCCTCAACATCCCAGACCTTATCAGTAAACGAATTGGATCCGAATCTGTGTTGCCATACCTGAGTCCTGAACTAAGAGGCCAGAGG TTACTTAATGGTGCCAATTTTGCCTCAGCAGGAATTGGAATCCTCAACGATACCGGAGTTCAATTTATAAACATAATCAGAATGTATAGACAACTTGAAT ACTTCCAAGAATACCAGCGACGAGCTCGAGCACTTGTAGGAGTTGATCAGACTGAGAGACTTGTAAAAGGAGCCCTCGTCCTGATTACTGTTGGTGGCAA TGATTTCGTGAACAACTACTACTTGATACCCTATTCTGCAAGGTCTCGCCAATTTTCTGTACCGAATTATGTCAAATATCTCATTTCAGAGTACGAAAAA ATACTAATGAAGCTATATAAACTGGGAGCACGTAGAGTTCTCGTGACAGGGACCGGGCCAATGGGTTGTGTTCCAGCAGAGTTAGCTATGAGGAGCACAA ATGGGGGTTGTTCAGCCGAACTTCAACGAGCCGCGTCCTTGTTCAATCCACAACTTGTTCAGATGCTAAAAGGACTAAACAAAAAGATTGGAAATACTGT TTTTATTGCTGCAAACACACAACAATCACACTTGGATTTCATTAGTAATCCTCAAGCATATGGATTTACCACAGCAAAGACAGCGTGTTGTGGACAAGGA CCATACAATGGTCTAGGACTATGCACAGCAGCATCCAACTTGTGCCCGAATCGAGACCTCTATGCATTCTGGGATGCATTCCATCCATCTGAAAAGGCAA ACCGATTGATCGTGGAACAGATATACTCTGGCACTACCAAGTACATGGACCCCATGAATCTCAGCACAATCATGACCTTGGATGCTAGGGCATGA
AA sequence Show only first row Show all	>Potri.019G024700.1 pacid=42773069 polypeptide=Potri.019G024700.1.p locus=Potri.019G024700 ID=Potri.019G024700.1.v4.1 annot-version=v4.1 MASSSIVGVIFSLVLALKYVALQAEARAFFVFGDSLVDSGNNNYLATTARADSPPYGIDYPSHRPTGRFSNGLNIPDLISKRIGSESVLPYLSPELRGQR LLNGANFASAGIGILNDTGVQFINIIRMYRQLEYFQEYQRRARALVGVDQTERLVKGALVLITVGGNDFVNNYYLIPYSARSRQFSVPNYVKYLISEYEK ILMKLYKLGARRVLVTGTGPMGCVPAELAMRSTNGGCSAELQRAASLFNPQLVQMLKGLNKKIGNTVFIAANTQQSHLDFISNPQAYGFTTAKTACCGQG PYNGLGLCTAASNLCPNRDLYAFWDAFHPSEKANRLIVEQIYSGTTKYMDPMNLSTIMTLDARA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G33370			GDSL-like Lipase/Acylhydrolase...		Potri.019G024700 [exp]	0	1
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082800 [exp]	1.73	0.9999
AT4G24340			Phosphorylase superfamily prot...		Potri.013G081233 [exp]	3.00	0.9998
AT4G24340			Phosphorylase superfamily prot...		Potri.013G082066 [exp]	4.00	0.9992
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.013G051000 [exp]	4.24	0.9983
AT5G20740			Plant invertase/pectin methyle...		Potri.006G137800 [exp]	4.47	0.9984
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138451 [exp]	6.32	0.9965
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080400 [exp]	6.48	0.9968
AT1G56170	CCAAT	NF-YC2, ATHAP5B...	"nuclear factor Y, subunit C2"...		Potri.017G120000 [exp]	7.34	0.9956
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.004G084500 [exp]	9.48	0.9869
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Potri.018G131400 [exp]	9.48	0.9949

Compare expression of checked genes

Potri.019G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.