Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04260 1229 / 0 PDE324, PTAC3 PIGMENT DEFECTIVE 324, plastid transcriptionally active 3 (.1) AT5G04810 59 / 1e-08 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G12100 58 / 3e-08 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 57 / 5e-08 RPF2 rna processing factor 2 (.1) AT1G18900 56 / 2e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT5G50280 56 / 2e-07 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G51965 54 / 6e-07 ABO5 ABA Overly-Sensitive 5 (.1) AT1G63150 53 / 7e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 53 / 8e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 53 / 1e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245500 [exp] 72 / 6e-13 AT1G20300 571 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 66 / 1e-10 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.007G123600 [exp] 58 / 4e-08 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G108600 [exp] 57 / 5e-08 AT5G38730 762 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G118500 [exp] 57 / 7e-08 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.005G050240 [exp] 56 / 1e-07 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G264800 [exp] 56 / 2e-07 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046000 [exp] 55 / 2e-07 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 55 / 2e-07 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003578 [exp] 1041 / 0 AT3G04260 1066 / 0.0 PIGMENT DEFECTIVE 324, plastid transcriptionally active 3 (.1) Lus10003577 [exp] 127 / 2e-34 AT3G04260 142 / 9e-41 PIGMENT DEFECTIVE 324, plastid transcriptionally active 3 (.1) Lus10008650 [exp] 60 / 9e-09 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018318 [exp] 57 / 5e-08 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10043434 [exp] 56 / 1e-07 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001588 [exp] 56 / 2e-07 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 55 / 2e-07 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10021074 [exp] 54 / 3e-07 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032174 [exp] 54 / 3e-07 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003657 [exp] 54 / 4e-07 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0306 [poplar] [flax] HeH PF02037 [poplar] [flax] SAP SAP domain CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.019G025100.1 pacid=42774121 polypeptide=Potri.019G025100.1.p locus=Potri.019G025100 ID=Potri.019G025100.1.v4.1 annot-version=v4.1 ATGTTTCTCCTCTCTCTCCAAACTCCACTTCCTTTCAAACCCCGCCACTCCCTCCCCTCTAAAAACGGCGTCGTTTATGCCTCTACCTCAGCAACTGCGC CGAAAAAATCCAGGCGAAAGAAACCACCAAAACAAAAAAACGACAATGGCTCGCCGCTCTCCGTCGTCGTTTCCGCAGAGGAGAAAAACCTCCGGTTCGC ATTCATGGAAGAGCTCATGCACCGCGCGAGAAATCGCGACTCGAACGGCGTGTCGGATGTCATTTATGATATGATCGCTGCTGGTCTCTCCCCTGGACCC CGCTCCTTTCACGGTCTCATTGTTGCTCATACTCTCAATGGTGATCATGAAGGCGCGATGCAATCGTTACGAAGAGAATTGAGCGCAGGACATCGGCCGC TGCACGAAACATGTATAGCGTTAATCCGGTTGTTTGGATCAAAAGGATTTGGTACTAGAGGGTTAGAATTACTAGCGGCAATGGAGAAATTAAATTATGA TATTCGGCGCGCTTGGATACTTCTTGTTGAGGAGCTTGTGAAGGGAAGATTTATGGAGGACGCCAATAGAGTGTTTTTGAAGGGAGCAAATGGCGGATTG AGAGCTACGGATGAGCTTTATGATTTGATGATTGAGGAGGATTGTAAAGTTGGGGATCATTCTAATGCTTTGGATATTGCTTATGCGATGGAGGAAGCGG GGAGGATGGCAACGACTTTTCATTTTAATTGTCTTCTTAGTGTGCAGGCTACTTGTGGAATACCTGAAATATCTTTTGCAACATTTGAGAACATGGAGTA CGGAGAAGACTATATGAAACCCGATACTGAGTCGTATAATTGGGTGATTCAAGCATATACCAGGGCTGAATCCTATGACAGGGTGCAAGATGTTGCTGAA TTGCTTGGCATGATGGTTGAAGACCACAAGCGTATACAACCTAATGTGAAAACTTATGCGCTGTTAGTGGAGTGCTTTTCCAAGTACTGTGTAGTGCGTG AAGCTATTCGGCATTTTCGTGCACTTAGAAAGTTTGAAGGAGGAACAAAAGCTTTGCATAATGAAGGGAAGTTTGGGGACCCACTTTCTTTGTATCTTCG AGCTTTATGTCGAGAAGGTAGGATTGTTGACTTGCTGGAAGCTTTAGAAGCCATGGCCGAAGATAACCAACCTATTCCACCAAGGGCCATGATATTGAGC AGAAAATATCGGACATTAGTTAGCTCATGGATCGAACCTTTGCAAGAAGAAGCTGAACTTGGATACGAGATTGATTACGTTGCTAGATACGTTGCTGAGG GCGGGCTTACTGGTGAGCGCAAGCGTTGGGTGCCTCGAAGAGGTAAAACTCCTCTAGATCCCGACTGTGATGGATTTATATACTCAAACCCTATGGAAAC CTCCCTTAAGCAAAGGTGTCTTGAGGATTGGAAGGCTCACCATCGAAAGCTTTTGAAGATGTTACGAAATGAAGGACTTGCAGCTCTGGGGGATGCATCT GAATCTGATTACCTTAGAGCAGAGGAGAGATTGAGGAAAATAATCAGAGGTCCAGACCGTAATGTTCTTAAGCCTAAGGCTGCTAGCAAGATGATAGTGT CTGAGTTAAAGGATGAACTAGAAGCACAAGGTCTGCCAATTGATGGAACTAGAAATGTTCTTTATCAGCGTGTGCAAAAGGCAAGGAGAATAAACCGTTC TCGTGGCCGGCCTCTCTGGGTCCCACCTGTGGAGGAGGAGGAGGAAGAGGTTGATGAAGAGGTAGATGAACTAATTTCACGAATCCAGTTGCATGAAGGA GATACAGAATTCTGGAAGCGCAGATTTCTTGGAGAGGGCTTCAATGGCAATCATGTTAAGCCAGTGGACATGGAGACATCTGAACTTCCAGATGAGTTGG ACGAGGATGAAGATGATGATGATGATGATGTAGAAGATGTTGCAAAAGAGGTTGAAGACGAGGAGGCTGATGAAGAGGGGGAAGTTGAAGTAGAAGTAGA ACAAACCGAGAGCCAAGATGCAGAAAGGATTGTGAAGGCCAAGGAAGCTGAGGCTAAGAAGCCCCTTCAAATGATTGGAGTGCAACTGTTGAAAGACTCT GATCAAACAACTAGAATGTCAAAAAAATCAAGAAGAAGAGCTGCTCGACTAGCTGTGGCGGATGACGACGACGACGACTGGTTTCCTGAAGATATACTTG AGGCTTTCAAGGAGATGAGAAACAGAAAAGTTTTTGATGTGGAAGACATGTATTTAATAGCTGATGCTTGGGGTTGGACATGGGAGAGAGAAATAAAGAA GAGGCCTCTCCAGAGGTGGTCACAAGAATGGGAGGTCGAGTTGGCAATTCAATTAATGCTGAAGGTCATAGAATTGGGTGGAACACCCACTATTGGAGAT TGTGCCATGATATTGCGGGCGGCTATTAGGGCTCCAATGCCTTCAGCTTTTTTGAAGATCTTGCAGACAACACACAGCCTAGGCTATCAATTCGGGAGTT CTCTATACGATGAAATAATCTCCTTGTGTGTTGACCTTGGGGAACTGGATGCAGCGATCGCAATAGTTGCAGATTTGGAGACTGCTGGAATTGCAGTCCC AGACCAGACCCTCGACCGAGTCATTTCTGCTAAACAAGCGCCTGAGAGTGCTGCGGAGGAGACATTATCGTAG
AA sequence Show only first row Show all	>Potri.019G025100.1 pacid=42774121 polypeptide=Potri.019G025100.1.p locus=Potri.019G025100 ID=Potri.019G025100.1.v4.1 annot-version=v4.1 MFLLSLQTPLPFKPRHSLPSKNGVVYASTSATAPKKSRRKKPPKQKNDNGSPLSVVVSAEEKNLRFAFMEELMHRARNRDSNGVSDVIYDMIAAGLSPGP RSFHGLIVAHTLNGDHEGAMQSLRRELSAGHRPLHETCIALIRLFGSKGFGTRGLELLAAMEKLNYDIRRAWILLVEELVKGRFMEDANRVFLKGANGGL RATDELYDLMIEEDCKVGDHSNALDIAYAMEEAGRMATTFHFNCLLSVQATCGIPEISFATFENMEYGEDYMKPDTESYNWVIQAYTRAESYDRVQDVAE LLGMMVEDHKRIQPNVKTYALLVECFSKYCVVREAIRHFRALRKFEGGTKALHNEGKFGDPLSLYLRALCREGRIVDLLEALEAMAEDNQPIPPRAMILS RKYRTLVSSWIEPLQEEAELGYEIDYVARYVAEGGLTGERKRWVPRRGKTPLDPDCDGFIYSNPMETSLKQRCLEDWKAHHRKLLKMLRNEGLAALGDAS ESDYLRAEERLRKIIRGPDRNVLKPKAASKMIVSELKDELEAQGLPIDGTRNVLYQRVQKARRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIQLHEG DTEFWKRRFLGEGFNGNHVKPVDMETSELPDELDEDEDDDDDDVEDVAKEVEDEEADEEGEVEVEVEQTESQDAERIVKAKEAEAKKPLQMIGVQLLKDS DQTTRMSKKSRRRAARLAVADDDDDDWFPEDILEAFKEMRNRKVFDVEDMYLIADAWGWTWEREIKKRPLQRWSQEWEVELAIQLMLKVIELGGTPTIGD CAMILRAAIRAPMPSAFLKILQTTHSLGYQFGSSLYDEIISLCVDLGELDAAIAIVADLETAGIAVPDQTLDRVISAKQAPESAAEETLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Potri.019G025100 [exp]	0	1
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	1.41	0.9735
AT4G33760			tRNA synthetase class II (D, K...		Potri.009G084300 [exp]	1.41	0.9652
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	5.47	0.9626
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	5.91	0.9562
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.002G029600 [exp]	6.92	0.9604
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Potri.014G195600 [exp]	8.18	0.9140
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Potri.001G103300 [exp]	10.39	0.9558	Pt-PDE316.1
AT1G72040			P-loop containing nucleoside t...		Potri.013G109400 [exp]	11.35	0.9275
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	11.53	0.9500
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.001G367500 [exp]	13.49	0.8855

Compare expression of checked genes

Potri.019G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.