Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18410 2229 / 0 ATSRA1, KLK, PIRP, SRA1, PIR121 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3) AT5G18404 82 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051200 [exp] 2479 / 0 AT5G18410 2241 / 0.0 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004776 [exp] 2208 / 0 AT5G18410 2154 / 0.0 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3) Lus10003109 [exp] 309 / 6e-96 AT5G18410 284 / 1e-87 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05994 [poplar] [flax] FragX_IP Cytoplasmic Fragile-X interacting family PF07159 [poplar] [flax] DUF1394 Protein of unknown function (DUF1394)
Representative CDS sequence Show only first row Show all	>Potri.019G025200.2 pacid=42773536 polypeptide=Potri.019G025200.2.p locus=Potri.019G025200 ID=Potri.019G025200.2.v4.1 annot-version=v4.1 ATGGCAGTTCCAGTCGAAGAAGCCATAGCAGCTCTCTCTACCTTCTCTCTTGAAGATGAGCAAGCAGAGGTCCAAGGAGCTGGGGTTTTGGTTTCATCCG AAAGAGGAGCAACCAACAGTCCTATTGAGTATGGTGATGTTTCTGCGTATCGTTTATCTCTATCAGAAGACACAAAAGCTCTGAATCAGCTGAATGCACT TATCCAAGAGGGGAAGGAGATGGCATCGGTGCTTTATACGTATAGAAGTTGCGTCAAAGCACTTCCTCAGCTTCCAGAATCCATGAAGCACAGTCAGGCT GACTTGTATCTGGAGACGTATCAAGTTTTGGACTTGGAGATGAGTCGTTTGCGTGAAATCCAGAGATGGCAAGCATCGGCTGCATCGAAACTAGCAGCTG ATATGCAGCGGTTTTCTAGGCCTGAGCGGCACATTAATGGCCCCACGATAACCCATCTCTGGTCCATGTTGAAGTTGCTTGATGTTTTAGTTCAACTTGA TCATCTTAAAAATGCCAAGGCAAGCATACCTAATGACTTCTCATGGTACAAGAGGACATTCACCCAAGTTAGTGTTCAGTGGCAAGACATTGATTCTATG AGGGAGGAGTTAGATGATTTACAGATATTCTTAAGCACAAGGTGGGCAATCTTATTGAACTTGCATGTCGAGATGTTTCGGGTGAACAATGTAGAAGATA TTCTTCAAGTTCTGATAGTCTTTGCTGTTGAGTCATTGGAATTGGATTTTGCGCTTTTATTTCCTGAGAGACACATTCTTCTACGTGTTTTACCTGTCCT TGTCGTCTTAGCAACATCATCAGAAAAAGACAGTGAGTCACTGTACAAGAGGGTAAAAATAAACAGGCTGATAAATATTTTCAAGAACGATCCAGTCATT CCTGCATTCCCTGATCTTCATCTTTCTCCTGCTGCAATCTTGAAAGAGTTGTCCATTTACTTTCAAAGGTTTTCTGCACAAACTCGTCTTCTCACCCTTC CAGCACCTCATGAGCTCCCACCTCGGGACGCACAAGATTATCAGAGGCATTATCTCATCATTAATCACATTGGAACTATTCGTGCCGAGCATGATGATTT CACAATTCGTTTTGCTTCATCCTTGAATCAGCTATTATTATTGAAGTCAATAGATGGTGCAGATGTTGATTGGTGCAAAGAAGTCAAGGGAAACATGTAT GATATGGTTGTTGAAGGGTTCCAGCTCTTAAGCAGATGGACTGCACGGATTTGGGAACAATGTGCTTGGAAATTTTCTCGCCCATGCAAAGAGGCAATTC CTTCAGAATCAAATGGATCTTCAGAATCGTTTTTCGACTATGAAAAGGTGGTACGATATAATTACAGTGCTGAGGAGAGGAAAGCACTTGTTGAGCTTGT TAGTTACATAAAAAGTGTTGGATCGCTGATGCATCGGCATGACACATTGGTAGTTGATGCCTTATGGGAAACAATACATGCTGAAGTCCAAGATTTTGTC CAAAACACATTAGCCACCATGTTGAGGACTACCTTTAGAAAGAAGAAGGACCTGTCGAGGATTCTTTCTGACATGCGGACGCTTTCAGCAGACTGGATGG CAAATACAAGCAAGCCTGAATCTGATTTACAGTCACATGGAGGTGATGAAAGCAAAGGGAGCTTCTTTTATCCAAGGCCAGTGGCACCCACAGCCACGCA GGTCCATTGCTTGCAGTTCTTGATATATGAAGTGGTGTCTGGTGGTAATCATCGGAAGCCTGGTGGGCTCTTTGGCAACAGTGGGTCTGAGATTCCTGTG AACGATTTAAAGCAATTGGAGAGCTTCTTTTACAAGCTTAGCTTCTTCCTACATATATTGGACTATTCAGCGACTGTGGCAACTTTGACAGATCTTGGTT TCTTATGGTTTAGAGAATTTTATTTGGAGTCATCTCGAGTTATTCAGTTTCCTATTGAATGCTCTCTTCCTTGGATGCTGGTGGATCATGTGCTTGAGTC CCAGAATGCAGGTCTTCTTGAAAGTGTTCTGATGCCATTTGACATCTACAATGATTCAGCTCAGCAAGCTCTGGCTGCATTAAGGCAGCGATTCCTCTAT GATGAAATTGAGGCCGAGGTGGACCATTGTTTTGATTTATTTGTTTCAAAACTCTCTGAAATTATTTTCACTTGTTACAAGAGTTGGGCAGCAAGTGAAA TGCTTGATCCTTCATTCCTCTTTGCTTTGGACAATGGAGAAAAGTATTCTGTACAGCCTATGAGATTCACTGCACTATTTAAGATGACGAGAGTAAAGTT ACTTGGGAGGACCATTGATTTAAGAAGCTTGGTTTCTGAAAGGATGAACAAGGTTTTCAGAGACAATATTGAGTTTCTTTTTGATCGTTTTGAGTCTCAA GATCTATGTGCAGTGGTGGAATTAGAAAAACTTCTGGAAATATTAAAGCATGCTCATGGACTGCTTTCAAAAGATATTTCAATAGACTCGTTCAGTCTCA TGTTGAATGAAATGCAAGAAAACTTATCTCTTGTATCATTTTCTAGTCGACTTGCAACTCAGATTTGGTCAGAGATGCAAAGTGATTTCCTGCCAAACTT TGTCTTATGCAACACTACTCAGCGTTTTGTCCGATCATCAAGAGTTCCTCTTGTTCCTGTGCAAAAGCCATCAGTTCCCCATGCAAAGGACAACTTCTAT TGTGGTACTCAGGAGTTGAATTCTGCGCATCAAAGCTTTGCTCGTTTGCACAGTGGGTTCTTTGGAATTCCCCACATGTTTTCTGTTGTTAGACTTCTAG GATCCAGATCGTTGCCTTGGCTTATCCGAGCCCTGTTAGATCATATAACAAATAAGGTAACTACACTTGAACCAATGATTACTGGATTGCAAGCAGCGTT GCCAAAATCTATTGGACTGCTCCCTTTTGATGGAGGAGTCACAGGCTGTATGAGGGTTGTCAAAGAAAATCTTAACTGGGGAACTAAATCAGAGCTCAAA GCAAAGGTTCTTCGAGGGATTAAAGAGATTGGCAGTGTGTTATATTGGATGGGGCTTCTTGACATTGTATTGAGGGAAGTTGATACCATGCATTTCATGC AAACTGCCCCTTGGTTGGGCTTGTTTCCTGGCGCAGATGGCCAAATATTGCATTCACAGGATGGTGGGGATAGTCCTGTTGTCAATCTTTTCAAATCAGC CACTGCTGCAATAGTGTCTAACCCTGGTTGTCCAAATCCAACATCTTTTTATACCATGTCAAAACAGGCAGAAGCTGCAGATCTTCTTTACAAAGCTAGC ATGAATACTGGAAGTGTGCTGGAATATGCCCTTGCTTTTACCAGTGCTGCATTGGATAAATATTGCAGTAAATGGAGTGCTGCTCCCAAGACAGGCTTCA TTGACATAACAACCTCAAAGGACTTTTACCGTATATATAGTGGCCTTCAAATTGGACACCTGGAGGATTCTGTTCAAGTATCATCGAATAATTTTGAAGT CTTGGGTGACTCAGTTGCATGGGGTGGCTGTACCATAATCTACTTGCTTGGACAGCAGATGCATTTTGAACTCTTTGATTTTTCATATCAAGTCCTCAAT ATTGCAGAAGTGGAGGCTGGATTGCTTAGCCAAGCACATAAGAATCCTCATGCTGCCCAGGGATGGGAAACCCTATTAGAAGCCATGAAGAAAGCAAGAA GGTTGAACAATCATGTTTTCTCGATGCTGAAAGCCCGTTGCCCCCTTGAAGACAAGATAGCGTGTGCTATCAAGCAAAGTGGTGCTCCTCTGCATCGGAT TAAGTTCGAGAACACTGTTTCAGCATTTGAAACATTGCCTCAAAAAGGTGCCTGA
AA sequence Show only first row Show all	>Potri.019G025200.2 pacid=42773536 polypeptide=Potri.019G025200.2.p locus=Potri.019G025200 ID=Potri.019G025200.2.v4.1 annot-version=v4.1 MAVPVEEAIAALSTFSLEDEQAEVQGAGVLVSSERGATNSPIEYGDVSAYRLSLSEDTKALNQLNALIQEGKEMASVLYTYRSCVKALPQLPESMKHSQA DLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERHINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDIDSM REELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPVI PAFPDLHLSPAAILKELSIYFQRFSAQTRLLTLPAPHELPPRDAQDYQRHYLIINHIGTIRAEHDDFTIRFASSLNQLLLLKSIDGADVDWCKEVKGNMY DMVVEGFQLLSRWTARIWEQCAWKFSRPCKEAIPSESNGSSESFFDYEKVVRYNYSAEERKALVELVSYIKSVGSLMHRHDTLVVDALWETIHAEVQDFV QNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSKPESDLQSHGGDESKGSFFYPRPVAPTATQVHCLQFLIYEVVSGGNHRKPGGLFGNSGSEIPV NDLKQLESFFYKLSFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVLMPFDIYNDSAQQALAALRQRFLY DEIEAEVDHCFDLFVSKLSEIIFTCYKSWAASEMLDPSFLFALDNGEKYSVQPMRFTALFKMTRVKLLGRTIDLRSLVSERMNKVFRDNIEFLFDRFESQ DLCAVVELEKLLEILKHAHGLLSKDISIDSFSLMLNEMQENLSLVSFSSRLATQIWSEMQSDFLPNFVLCNTTQRFVRSSRVPLVPVQKPSVPHAKDNFY CGTQELNSAHQSFARLHSGFFGIPHMFSVVRLLGSRSLPWLIRALLDHITNKVTTLEPMITGLQAALPKSIGLLPFDGGVTGCMRVVKENLNWGTKSELK AKVLRGIKEIGSVLYWMGLLDIVLREVDTMHFMQTAPWLGLFPGADGQILHSQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFYTMSKQAEAADLLYKAS MNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDITTSKDFYRIYSGLQIGHLEDSVQVSSNNFEVLGDSVAWGGCTIIYLLGQQMHFELFDFSYQVLN IAEVEAGLLSQAHKNPHAAQGWETLLEAMKKARRLNNHVFSMLKARCPLEDKIACAIKQSGAPLHRIKFENTVSAFETLPQKGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	0	1
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	1.00	0.9286
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.016G032100 [exp]	1.41	0.8934
AT2G41830			Uncharacterized protein (.1)		Potri.016G055100 [exp]	2.00	0.8794
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.014G039100 [exp]	3.16	0.8695
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	4.24	0.8835	ALDH1.2
AT4G36660			Protein of unknown function (D...		Potri.014G181600 [exp]	4.24	0.8573
AT3G15410			Leucine-rich repeat (LRR) fami...		Potri.011G121700 [exp]	5.65	0.8716
AT4G30993			Calcineurin-like metallo-phosp...		Potri.018G110300 [exp]	5.65	0.8592
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	6.48	0.8717	Pt-RAB11.12
AT1G76070			unknown protein		Potri.005G245600 [exp]	9.38	0.8693

Compare expression of checked genes

Potri.019G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.