Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63930 1321 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 1178 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 978 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G34110 630 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 608 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 592 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 585 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 585 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G26540 579 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 575 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051300 [exp] 1722 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G053400 [exp] 1344 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 1319 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 997 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 623 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 606 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G258400 [exp] 605 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.011G164800 [exp] 596 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G258000 [exp] 595 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023681 [exp] 1041 / 0 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011761 [exp] 890 / 0 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 640 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 615 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 582 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10032954 [exp] 569 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 568 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10018911 [exp] 565 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 563 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10008712 [exp] 553 / 2e-179 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G025500.1 pacid=42773270 polypeptide=Potri.019G025500.1.p locus=Potri.019G025500 ID=Potri.019G025500.1.v4.1 annot-version=v4.1 ATGGAGAGAATATCATATAGGCTGCTCCCTGTATTTGTTCTTGTTGTTTCCCTCTTGTTTCATCAGTCCATGGGGCTTAATGCTGAGGGGCAATACCTCC TAGATATAAAGAGTAGAATTGGTGACACCTATAACCATCTTAGCAACTGGAATCCTAATGATTCCATTCCTTGTGGGTGGAAAGGTGTGAATTGCACCAG TGATTACAATCCAGTGGTTTGGCGTCTTGATTTGAGTTCAATGAATCTTTCTGGCTCTTTATCACCAAGTATAGGTGGATTGGTTCATTTGACACTTCTT GATCTTTCTTTTAATGCTTTGTCTCAAAATATACCTAGTGAAATCGGAAATTGTTCGAGTTTGGAGTCTCTTTATCTGAACAATAACCTTTTTGAAAGCC AACTCCCTGTGGAATTAGCTAAGCTTTCTTGTTTGACGGCTTTGAATGTAGCCAACAATAGAATATCAGGTCCTTTTCCTGATCAGATTGGAAACCTTTC CTCTCTGTCACTATTGATTGCATACAGTAATAACATCACCGGATCATTGCCTGCTTCTCTTGGAAACCTTAAGCATTTGAGGACTTTTAGGGCAGGGCAG AATTTGATATCCGGAAGCTTACCTTCGGAGATAGGTGGATGTGAGAGTTTGGAGTATCTTGGTCTTGCACAAAATCAGTTAAGTGGTGAAATACCAAAAG AAATTGGAATGCTCCAGAACTTGACGGCTTTGATCCTTCGGTCTAATCAGCTTTCTGGGCCTATTCCAATGGAGCTGAGCAATTGCACCTATTTGGAGAC CCTTGCTCTCTATGACAACAAACTTGTAGGGCCTATACCCAAGGAGCTTGGTAATCTTGTATATCTGAAGAGGTTTTACCTCTACAGAAATAACTTGAAC GGGACAATTCCAAGAGAGATTGGAAATCTGTCTTCTGCATTAGAGATCGACTTCTCGGAGAATGAGTTGACTGGAGAGATACCGATTGAGCTGAAGAACA TAGCCGGGCTGTCGTTGCTTTATATTTTTGAGAACATGCTTACCGGTGTCATACCAGATGAGCTCACAACTTTGGAAAACCTGACAAAGCTTGACATATC AATCAATAATCTCACTGGTACTATTCCTGTGGGTTTCCAGCATATGAAGCAGCTGATCATGTTGCAGCTCTTCGATAACTCATTGAGCGGTGTCATTCCT CGAGGACTTGGAGTCTACGGCAAACTTTGGGTGGTTGACATTTCAAATAACCACTTAACAGGAAGAATACCGCGCCATCTTTGCAGAAATGAAAACCTGA TTTTGCTGAACATGGGGTCAAACAATCTCACGGGTTATATCCCAACAGGGGTGACAAATTGCAGGCCGCTGGTTCAACTTCATCTTGCAGAAAATGGCCT TGTGGGAAGTTTCCCATCTGATTTGTGCAAGTTGGCGAACCTCTCTAGTCTTGAATTGGATCAGAACATGTTCACTGGGCCAATTCCTCCAGAGATTGGT CAATGCCATGTTCTGCAAAGGCTGCATCTCTCTGGTAACCATTTTACTGGTGAATTGCCAAAAGAGATTGGCAAACTGTCCCAGCTGGTGTTTTTTAACG TCTCAACAAATTTTCTCACCGGAGTGATACCGGCAGAGATTTTTAACTGCAAGATGCTTCAACGGCTTGATCTCACCAGGAATAATTTTGTGGGTGCTTT ACCAAGTGAGATAGGAGCCCTTTCCCAACTGGAGATTCTCAAGCTTTCAGAGAATCAACTTTCCGAGCACATACCTGTGGAAGTAGGAAATTTGTCACGC CTAACTGACTTACAAATGGGAGGCAACTCATTTTCTGGTGAGATACCGGCTGAGTTGGGTGGCATTTCAAGCTTGCAGATTGCCCTGAATCTTAGTTACA ACAATCTCACCGGCGCAATCCCCGCAGAGCTTGGGAATCTTGTATTGCTGGAATTCCTGCTTCTCAACGACAATCATCTGAGTGGTGAAATCCCAGACGC CTTCGATAAATTATCTAGCTTACTTGGATGCAACTTCTCAAACAATGATTTGACAGGGCCTTTACCTTCCCTGCCATTATTCCAAAAGACAGGCATCAGC AGCTTTCTTGGGAACAAAGGGCTTTGTGGTGGAACTCTTGGAAATTGTAATGAATTTCCACATTTGTCATCTCATCCCCCAGATACTGAAGGGACAAGTG TTCGTATAGGAAAAATAATTGCTATTATTTCTGCAGTCATTGGTGGGAGTTCTCTCATTTTAATTATAGTGATTATATACTTCATGAGACGTCCGGTCGC CATAATTGCTTCTTTGCCAGATAAACCATCCTCTTCTCCAGTTTCAGACATTTACTTTTCCCCCAAGGATGGGTTCACTTTCCAGGACTTAGTTGTGGCA ACTGACAATTTCGATGATAGCTTCGTTTTAGGGAGGGGAGCCTGTGGAACTGTATACAAGGCAGTCTTGCGATGTGGTCGTATCATTGCAGTTAAGAGGC TGGCGTCTAACAGGGAGGGAAACAATATTGATAATAGCTTCCGTGCTGAGATTCTGACTTTGGGAAATATCAGGCATCGGAATATTGTGAAGCTGTATGG TTTCTGCAATCACCAGGGCTCCAACCTGCTTCTTTATGAATACTTGGCAAGGGGAAGCTTGGGAGAATTGCTCCATGGATCATCATGCGGTCTTGATTGG CGGACAAGATTCAAGATTGCCCTTGGAGCTGCTCAAGGTCTTGCTTATTTGCATCATGATTGCAAGCCTCGGATATTTCATCGTGACATTAAGTCCAATA ACATTCTGCTTGATGAGAAGTTTGAAGCTCATGTCGGGGACTTTGGGCTCGCAAAGGTGATTGATATGCCACAATGGAAATCAATGTCTGCTGTTGCCGG TTCTTATGGCTACATTGCCCCTGAATATGCATACACCATGAAAGTCACCGAAAAATGCGACATTTATAGCTACGGAGTAGTCTTACTAGAACTGCTGACC GGCAGAACACCTGTGCAATCACTAGATCAAGGCGGCGATCTTGTGTCCTGGGTAAGAAACTACATTCAAGTTCATTCCTTATCACCTGGAATGCTTGATG ATCGAATCAATCTGCAAGATCAGAATACAATCCCTCACATGATTACTGTCATGAAAATTGCTCTAGTCTGCACAAGCATGTCTCCTCTGGACAGACCAAC AATGCGAGAGGTTGTTTCGATGCTCATGGAGTCGAATAAACTTGAAGGACACTTCGATTCTTCCTCCTCGTCTTCGCCGAGTCATCATTCTAATTCTAGC GATGAACTTATCATACATGTGTAA
AA sequence Show only first row Show all	>Potri.019G025500.1 pacid=42773270 polypeptide=Potri.019G025500.1.p locus=Potri.019G025500 ID=Potri.019G025500.1.v4.1 annot-version=v4.1 MERISYRLLPVFVLVVSLLFHQSMGLNAEGQYLLDIKSRIGDTYNHLSNWNPNDSIPCGWKGVNCTSDYNPVVWRLDLSSMNLSGSLSPSIGGLVHLTLL DLSFNALSQNIPSEIGNCSSLESLYLNNNLFESQLPVELAKLSCLTALNVANNRISGPFPDQIGNLSSLSLLIAYSNNITGSLPASLGNLKHLRTFRAGQ NLISGSLPSEIGGCESLEYLGLAQNQLSGEIPKEIGMLQNLTALILRSNQLSGPIPMELSNCTYLETLALYDNKLVGPIPKELGNLVYLKRFYLYRNNLN GTIPREIGNLSSALEIDFSENELTGEIPIELKNIAGLSLLYIFENMLTGVIPDELTTLENLTKLDISINNLTGTIPVGFQHMKQLIMLQLFDNSLSGVIP RGLGVYGKLWVVDISNNHLTGRIPRHLCRNENLILLNMGSNNLTGYIPTGVTNCRPLVQLHLAENGLVGSFPSDLCKLANLSSLELDQNMFTGPIPPEIG QCHVLQRLHLSGNHFTGELPKEIGKLSQLVFFNVSTNFLTGVIPAEIFNCKMLQRLDLTRNNFVGALPSEIGALSQLEILKLSENQLSEHIPVEVGNLSR LTDLQMGGNSFSGEIPAELGGISSLQIALNLSYNNLTGAIPAELGNLVLLEFLLLNDNHLSGEIPDAFDKLSSLLGCNFSNNDLTGPLPSLPLFQKTGIS SFLGNKGLCGGTLGNCNEFPHLSSHPPDTEGTSVRIGKIIAIISAVIGGSSLILIIVIIYFMRRPVAIIASLPDKPSSSPVSDIYFSPKDGFTFQDLVVA TDNFDDSFVLGRGACGTVYKAVLRCGRIIAVKRLASNREGNNIDNSFRAEILTLGNIRHRNIVKLYGFCNHQGSNLLLYEYLARGSLGELLHGSSCGLDW RTRFKIALGAAQGLAYLHHDCKPRIFHRDIKSNNILLDEKFEAHVGDFGLAKVIDMPQWKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT GRTPVQSLDQGGDLVSWVRNYIQVHSLSPGMLDDRINLQDQNTIPHMITVMKIALVCTSMSPLDRPTMREVVSMLMESNKLEGHFDSSSSSSPSHHSNSS DELIIHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	0	1
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.014G024300 [exp]	1.41	0.8759
AT2G37730			Protein of unknown function (D...		Potri.016G101200 [exp]	2.00	0.8727
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.006G192000 [exp]	3.60	0.8303
AT3G11760			unknown protein		Potri.008G015700 [exp]	4.58	0.8512
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	4.89	0.8423
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	5.83	0.8010
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	6.32	0.8468
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	6.32	0.8470	PtrMTP2,Pt-MTP1.2
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197400 [exp]	6.70	0.8264
AT2G33170			Leucine-rich repeat receptor-l...		Potri.003G174900 [exp]	7.34	0.8219

Compare expression of checked genes

Potri.019G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.