Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SEC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04240 1689 / 0 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 281 / 1e-80 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05150 81 / 2e-15 Calcium-binding tetratricopeptide family protein (.1) AT2G32450 80 / 5e-15 Calcium-binding tetratricopeptide family protein (.1) AT5G63200 65 / 3e-10 tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 63 / 7e-10 NPGR1 no pollen germination related 1 (.1) AT3G48150 61 / 4e-09 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G58620 59 / 2e-08 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G06210 59 / 2e-08 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) AT4G12400 57 / 5e-08 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051400 [exp] 1915 / 0 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 300 / 4e-87 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 296 / 6e-86 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G234900 [exp] 85 / 1e-16 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 80 / 5e-15 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.007G052200 [exp] 69 / 2e-11 AT4G37460 1333 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G092000 [exp] 64 / 3e-10 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G108800 [exp] 64 / 4e-10 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1) Potri.001G389300 [exp] 62 / 2e-09 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004779 [exp] 1724 / 0 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 1723 / 0 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 1676 / 0 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003112 [exp] 313 / 1e-100 AT3G04240 305 / 2e-98 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 285 / 7e-82 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 268 / 4e-74 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010627 [exp] 84 / 3e-16 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033182 [exp] 84 / 4e-16 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033033 [exp] 79 / 1e-14 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10001406 [exp] 69 / 1e-11 AT4G37460 1271 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat CL0113 [poplar] [flax] GT-B PF13844 [poplar] [flax] Glyco_transf_41 Glycosyl transferase family 41
Representative CDS sequence Show only first row Show all	>Potri.019G025600.2 pacid=42774386 polypeptide=Potri.019G025600.2.p locus=Potri.019G025600 ID=Potri.019G025600.2.v4.1 annot-version=v4.1 ATGATTTCGTTGCAGAGTGGTGGTCGCCCGGCTGCTTTTGGTTCGGCTCGCGATGACGCCGTCGGTGGCTTCCAGCTGAATCTGGAGCCGTCGGCTTCTT CTTCGGCTCCGTTGAGTTTGTTGCCTTTTAAAGGCCGCGATTCTCATCATGAAGTTGTTGATGAAGAAGCACACTTGGAGCAGGCGCATAAGCTGTACAA ATCTGGGAATTACAAACAAGCGTTAGAGCATAGCAGTGCTGTTTACGAGAGAAGTCCACAGCGGACTGATAATCTTCTTCTTTTGGGTGCTATTTATTAT CAGTTGCAAGATTATGATATGTGCATTGCAAAAAACGAGGAAGCTCTTAGACTTCAGCCGCGTTTTGCGGAGTGCTATGGAAACATGGCAAATGCTTGGA AGGAAAAGGGTGATATTGATCGTGCAATTCGATACTATTTGGTTTCCATTGAGCTTCGACCCAACTTTGCTGATGCTTGGTCAAATTTGGCTAGTGCATA CATGCGAAAGGGAAGACTTAATGAGGCGTCACAATGTTGTCGTCAGGCCCTGGCATTGAATCCTCTTCTGGTTGATGCTCATAGCAATCTTGGGAATTTA ATGAAGGCTCAGGGATTAGTGCAAGAAGCATACAGTTGCTACCTTGAGGCTCTACGGATACAACCAAGTTTTGCTATTGCATGGTCAAATCTTGCTGGTC TCTTTATGGAGTCTGGTGACCTTAACAGAGCACTTCAATATTATAAGGAAGCTGTAAAACTTAAACCTAAATTTCCTGATGCCTACTTAAATCTTGGAAA TGTTTACAAGGCCCTGGGAATGCCTCAAGAGGCTATTATGTGTTATCAGCGAGCAGTTCAGACACGACCAAACTACGCGATGGCTTTTGGAAATTTGGCT AGTACATGTTATGAGCGAGGCCAAGTGGAGCTGGCGATTCTTCATTATAAGCAAGCCATTGCTTGTGATCAGAGATTTTTAGAGGCTTACAATAACTTGG GCAATGCATTGAAAGATGTTGGTAGAGTGGATGAAGCACTGCAATGCTATAATCAATGTCTTTCAATACAACCAAACCATCCTCAAGCACTTACCAACCT CGGGAATATATATATGGAATGGAATATGTCTGCAGCTGCTGCTTCATGTTACAAGGCCACTTTGGCTGTCACGACGGGGCTGTCTGCTCCTTTCAATAAT CTTGCTGTAATCTATAAACAACAGGGAAATTACTCGGATGCTATATCTTGCTATAATGAGGTTCTTCGAATCGAACCCATGGCAGCTGATGGACTTGTAA ATAGGGGCAACACTTACAAGGAGATTGGTAGAGTAAGCGAGGCAATTCAAGACTACATTCATGCTATCAATATCCGGCCAACCATGGCGGAAGCACATGC AAATTTGGCTTCAGCTTATAAAGACAGCGGACATGTGGAGGCTGCTATAAAGAGCTATAGGCAGGCACTGCTTCTGCGACCAGACTTTCCAGAAGCAACA TGCAACCTTTTACATACATTGCAGTGTGTCTGCTGTTGGGAGGATCGCGATAAAATGTTCGATGAAGTCGAAGGGATTATTCGGAGACAGATTTCGATGT CAGTTCTTCCTAGTGTGCAGCCTTTTCATGCTATAGCATATCCTATTGATCCCGTGCTTGCGCTTGAAATCAGTCACAAGTATGCAGCTCATTGCTCCAT AATTGCATCTCGTTTTGCACTTTCTCCCTTCAAGCATCCTGCCCCTCTTCCTGTTAAGCATGAACGTGGAAGTGGGAGACTTAGAATTGGATACGTGAGC AGTGACTTTGGCAACCATCCGTTGTCACACCTTATGGGCTCTGTATTTGGTATGCACAACAGAGAAAATGTTGAGGTTTTCTGCTATGCTTTGAGTCCAA ATGATGGTACTGAGTGGAGGCAGCGTACCCAGTTTGAAGCTGAGCATTTCATAGATGTATCTGCCATGTCATCAGATATGATTGCCAAACTAATTAATGA GGACAAGATACAGATCCTTATCAACCTTAATGGGTATACCAAGGGGGCCAGAAATGAAATATTTGCTATGCAACCTGCACCTATACAGGTTTCATACATG GGATTCCCTGGGACTACAGGAGCAACATACATTGATTACTTGGTCACTGATGAGTTTGTTTCACCCACCCGTTTCTCGCATATTTATTCTGAAAAGCTGG TTCACCTGCCACATTGCTACTTTGTGAATGATTATAAACAGAAAAACCTGGATGTGTTGGATCCAACGTGCCAGCACAAGCGATTGGATTATGGTCTCCC TGAAGATAAATTCATATTTGCATGCTTCAATCAGTTGTACAAAATGGATCCTGAAATCTTTAATACTTGGTGCAACATTCTTAAACGTGTACCCAACAGT GCACTTTGGCTCCTTAGGTTCCCTGCTGCAGGGGAAATGAGACTGCGAGCATATGCTGTTGCACAGGGGGTGAATCCAGACCAAATTATTTTCACAGATG TTGCCATGAAACAAGAGCATATCAGACGCAGTGCTTTGGCAGATTTATTTCTCGACACGCCATTATGCAATGCACATACCACGGGGACAGATATTCTGTG GGCAGGTTTGCCAATGGTGACCATGCCCCTTGAGAAAATGGCTACAAGAGTTGCTGGATCGCTTTGCCTTGCCACCGGACTTGGGGACGAGATGATTGTT AGCAGTATGAAAGAATATGAAGAGAGGGCTGTGTCTCTTGCATTAAATAAGCCAAAGCTTCAGTCCCTGACAAACAGATTGAAGGCATTCCGAATGACTT GCCCTCTGTTTGACACAAAACGCTGGGTTAGAAACCTGGAGAGGGCATATTTCAAAATGTGGAATATTCATTGCTCAGGCCAGCAACCCCATCACTTTAA AGTTGCTGAAAATGATTTTGACTGCCCTTACGATAGATGA
AA sequence Show only first row Show all	>Potri.019G025600.2 pacid=42774386 polypeptide=Potri.019G025600.2.p locus=Potri.019G025600 ID=Potri.019G025600.2.v4.1 annot-version=v4.1 MISLQSGGRPAAFGSARDDAVGGFQLNLEPSASSSAPLSLLPFKGRDSHHEVVDEEAHLEQAHKLYKSGNYKQALEHSSAVYERSPQRTDNLLLLGAIYY QLQDYDMCIAKNEEALRLQPRFAECYGNMANAWKEKGDIDRAIRYYLVSIELRPNFADAWSNLASAYMRKGRLNEASQCCRQALALNPLLVDAHSNLGNL MKAQGLVQEAYSCYLEALRIQPSFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPKFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNYAMAFGNLA STCYERGQVELAILHYKQAIACDQRFLEAYNNLGNALKDVGRVDEALQCYNQCLSIQPNHPQALTNLGNIYMEWNMSAAAASCYKATLAVTTGLSAPFNN LAVIYKQQGNYSDAISCYNEVLRIEPMAADGLVNRGNTYKEIGRVSEAIQDYIHAINIRPTMAEAHANLASAYKDSGHVEAAIKSYRQALLLRPDFPEAT CNLLHTLQCVCCWEDRDKMFDEVEGIIRRQISMSVLPSVQPFHAIAYPIDPVLALEISHKYAAHCSIIASRFALSPFKHPAPLPVKHERGSGRLRIGYVS SDFGNHPLSHLMGSVFGMHNRENVEVFCYALSPNDGTEWRQRTQFEAEHFIDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYM GFPGTTGATYIDYLVTDEFVSPTRFSHIYSEKLVHLPHCYFVNDYKQKNLDVLDPTCQHKRLDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNS ALWLLRFPAAGEMRLRAYAVAQGVNPDQIIFTDVAMKQEHIRRSALADLFLDTPLCNAHTTGTDILWAGLPMVTMPLEKMATRVAGSLCLATGLGDEMIV SSMKEYEERAVSLALNKPKLQSLTNRLKAFRMTCPLFDTKRWVRNLERAYFKMWNIHCSGQQPHHFKVAENDFDCPYDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.019G025600 [exp]	0	1	SEC.2
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.013G051400 [exp]	1.00	0.8873	SEC.1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Potri.002G113800 [exp]	8.48	0.7885	RXW8.1
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	25.65	0.7399
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	34.05	0.7572
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.008G077300 [exp]	41.85	0.7060
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	42.44	0.6942
AT1G67300			Major facilitator superfamily ...		Potri.018G083200 [exp]	44.72	0.6857
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035500 [exp]	46.95	0.7156
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	48.23	0.7216
AT5G46220			Protein of unknown function (D...		Potri.018G107800 [exp]	50.89	0.6941

Compare expression of checked genes

Potri.019G025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.