Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18390 638 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 148 / 2e-38 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 146 / 7e-38 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 144 / 4e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 143 / 4e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G49730 140 / 7e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 139 / 2e-35 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 139 / 3e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 136 / 6e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 136 / 1e-34 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032600 [exp] 157 / 8e-42 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G200800 [exp] 155 / 8e-41 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034300 [exp] 150 / 3e-40 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 150 / 1e-39 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 150 / 2e-39 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 147 / 1e-38 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 146 / 1e-37 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 144 / 2e-37 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 144 / 2e-37 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003575 [exp] 697 / 0 AT5G18390 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032787 [exp] 696 / 0 AT5G18390 625 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021250 [exp] 154 / 3e-40 AT5G06400 988 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 145 / 2e-37 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 143 / 1e-36 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 141 / 2e-36 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10030887 [exp] 140 / 2e-36 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 140 / 8e-36 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 138 / 1e-35 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 139 / 2e-35 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G025700.2 pacid=42774370 polypeptide=Potri.019G025700.2.p locus=Potri.019G025700 ID=Potri.019G025700.2.v4.1 annot-version=v4.1 ATGCTTCTCCGCTCCACAAAACCTCTCCATCACCACCTCTCCGCCACCAAACTCCTCCTTCTCCGCCACCTCAAAACCCTCCCCTCCACCACCACCAACA ACAGAGACGCCTACTTCTCCTTAATCCACAACATAACAAACATAATCCGCAAAGAAGTCTACCCAGAACGCACCCTCAACAAACTAAACCTTCCCATCAC TTCAGAACTCGTTTTTCGTGTCCTTCGAGCTTGCTCTAACTCTCCTTCCGAATCCCTCCGTTTCTTCAACTGGGCTCGCTCTTATTACTCTCCTACAACT ATTGAATACGAAGAACTCATCATAACCCTTGTACGTAACAAGAAATACGCCTCAATGTGGAAACTCATAGCCCAAGTTAAGGACAACCTCGGCGACAAAT TTTCTGTTTCTTCTGACACTGTTTGTTCTATCATCGAAGAGTATGGTAAACATGGTTTGATAGATCAAGCGGTTGAGGTTTTTAATAAATGTAGTCGTAG TTTAAATTGTCAACACAATGTTTGTGTTTATAACTCTTTGCTTTTCGCTTTGTGTGAGGTTAAAATGTTTCATGGTGCTTATGCTTTGGTTAGGAGAATG ATTAGAAAGGGGATAGTGCCGGATAAAAGGACTTATGGGGTTCTTGTTAATGGGTGGTGTTCGAGTGGGAAGTTACGAGAGGCGAAAGGGTTTTTGGAGG AAATGAGTAAGAAGGGGTTTAATCCACCGGTGAGAGGGAGGGATTTGTTGATTGAAGGGTTGTTGAATGCAGGCTATTTGGAGTCGGCGAAGGATATGGT GAGGAGGATGATGAAGGAAGGGCTTGTGCCGGATGTTAATACATTTAATTCAATGGTTGAGGCGATTTGCAATGCGGGGGAAGTTGATTTTTGTGTTGAT ATGTATCATAGTGTGTGTAAGTTGGGGTTTTGTCCGGATATAAATAGTTACAAGATTTTGATTCCAGCTGTTTCAAAGGTGGGTAGGATTGATGAGGCTT TCAGGTTGTTGCATAATTTGATTGAGGATGGGCACAAACCATTTCCTAGCTTGTATGCGCCAATAATTAAGGGGATGTTTAGGAGAGGGCAGTTTGATGA TGCGTTTTGTTTCTTTAGTGAGATGAAGGTCAAGGGACATCCTCCGAACAGGCCGGTGTATACAATGATGATAACAATGTGTGGACGTGGAGGGAAGCAT GTGGAAGCGGCGAATTATTTGGTGGAGATGACTGAGATAGGTTTGGTGCCAATTTCTAGGTGCTTTGATATGGTTACCGATGGGTTGAAGAATTGTGGGA AGCATGATCTTGCTAAAAGGATAGAGCAGTTGGAAGTTTCTCTTCGTGGTTCTTGA
AA sequence Show only first row Show all	>Potri.019G025700.2 pacid=42774370 polypeptide=Potri.019G025700.2.p locus=Potri.019G025700 ID=Potri.019G025700.2.v4.1 annot-version=v4.1 MLLRSTKPLHHHLSATKLLLLRHLKTLPSTTTNNRDAYFSLIHNITNIIRKEVYPERTLNKLNLPITSELVFRVLRACSNSPSESLRFFNWARSYYSPTT IEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCSIIEEYGKHGLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRM IRKGIVPDKRTYGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFCVD MYHSVCKLGFCPDINSYKILIPAVSKVGRIDEAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPPNRPVYTMMITMCGRGGKH VEAANYLVEMTEIGLVPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSLRGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	0	1
AT3G22430			unknown protein		Potri.008G152900 [exp]	1.00	0.9493
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	3.16	0.9303
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	4.24	0.9296
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.008G012250 [exp]	4.89	0.9221
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	6.00	0.9241
AT4G15820			unknown protein		Potri.008G222000 [exp]	6.24	0.9052
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	6.48	0.9240
AT2G37035			unknown protein		Potri.016G091400 [exp]	6.70	0.8848
AT5G40400			Pentatricopeptide repeat (PPR)...		Potri.017G071600 [exp]	8.00	0.9037
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	8.06	0.9244

Compare expression of checked genes

Potri.019G025700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.