Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13440 112 / 2e-31 Calcium-binding EF-hand family protein (.1) AT2G15680 39 / 0.0006 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026860 [exp] 292 / 6e-102 AT4G13440 112 / 7e-32 Calcium-binding EF-hand family protein (.1) Potri.019G027440 [exp] 290 / 2e-99 AT4G13440 112 / 2e-30 Calcium-binding EF-hand family protein (.1) Potri.019G027200 [exp] 282 / 6e-98 AT4G13440 103 / 3e-28 Calcium-binding EF-hand family protein (.1) Potri.019G029000 [exp] 258 / 1e-88 AT4G13440 101 / 2e-27 Calcium-binding EF-hand family protein (.1) Potri.019G026900 [exp] 250 / 3e-85 AT4G13440 105 / 1e-28 Calcium-binding EF-hand family protein (.1) Potri.019G027100 [exp] 250 / 3e-85 AT4G13440 105 / 1e-28 Calcium-binding EF-hand family protein (.1) Potri.019G028800 [exp] 248 / 2e-84 AT4G13440 106 / 3e-29 Calcium-binding EF-hand family protein (.1) Potri.019G027000 [exp] 246 / 1e-83 AT4G13440 105 / 5e-29 Calcium-binding EF-hand family protein (.1) Potri.019G026740 [exp] 230 / 2e-77 AT4G13440 127 / 2e-37 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004330 [exp] 39 / 0.0005 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10000889 [exp] 40 / 0.0008 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10008631 [exp] 40 / 0.0009 AT1G74740 886 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00036 [poplar] [flax] EF-hand_1 EF hand CL0220 [poplar] [flax] EF_hand PF13202 [poplar] [flax] EF-hand_5 EF hand
Representative CDS sequence Show only first row Show all	>Potri.019G026780.1 pacid=42773715 polypeptide=Potri.019G026780.1.p locus=Potri.019G026780 ID=Potri.019G026780.1.v4.1 annot-version=v4.1 ATGGAGGAGATTCGCCGAGCTGCTGAAGCTTATTATAAGAATCTGTCCGAGGAGAAGAAGCGAAATGCCAGATTTTATTTCAATGAAATGGACATAGACG GAGACGGGCGAATTAACCTAGATGAATACGTGGAGTATCTGAAGAAAGATAACAACACGGTTCTTACTCATCCAAGCTTGTTTACAGCGCTGGACAAGGA CGGCAATGGAAGCTTGGATTTTGAGGAAACAATCGTCTGGTACTACATCATGCAGAGTGGAAGAGCTCTATTTTGCCAGTCTTGTAATACGTTCTTGGCA GACGTATACTTCAGCTGCTTTCAATGTTTCTGTCTTGATGAGTCACCTAGCACCTATGATCTTTGTTGTGATTGTTATGGTGGAAAAAGGTTCACTCACC ACGATGATGCCGTCTTCTGGGATAACTATACTTTACTAAGTCAAAGCAGGAGCTTGGCACTTGAAGCTCCCGTACAGAAGCGAAGAAATGTTCTTAAAAA AATTGGAATGATAGTGCAAGTTACAGGCATAGTTGTTGGTGGTGCTTGCCTTGCGTCATCCTCTAGCTGCAGCATTATGTGA
AA sequence Show only first row Show all	>Potri.019G026780.1 pacid=42773715 polypeptide=Potri.019G026780.1.p locus=Potri.019G026780 ID=Potri.019G026780.1.v4.1 annot-version=v4.1 MEEIRRAAEAYYKNLSEEKKRNARFYFNEMDIDGDGRINLDEYVEYLKKDNNTVLTHPSLFTALDKDGNGSLDFEETIVWYYIMQSGRALFCQSCNTFLA DVYFSCFQCFCLDESPSTYDLCCDCYGGKRFTHHDDAVFWDNYTLLSQSRSLALEAPVQKRRNVLKKIGMIVQVTGIVVGGACLASSSSCSIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026780 [exp]	0	1
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026740 [exp]	2.64	0.9564
AT4G13440			Calcium-binding EF-hand family...		Potri.019G028800 [exp]	4.69	0.9669
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026820 [exp]	6.32	0.9636
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027440 [exp]	8.12	0.9315
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027000 [exp]	8.30	0.9627
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027100 [exp]	9.59	0.9605
AT1G47670			Transmembrane amino acid trans...		Potri.002G012900 [exp]	10.09	0.9265	PTRLHT10
AT4G31980			unknown protein		Potri.003G206801 [exp]	10.67	0.9412
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026900 [exp]	10.72	0.9602
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.003G041600 [exp]	11.48	0.9493

Compare expression of checked genes

Potri.019G026780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.