Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13440 103 / 3e-28 Calcium-binding EF-hand family protein (.1) AT5G17470 42 / 4e-05 EF hand calcium-binding protein family (.1) AT2G15680 41 / 0.0001 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT2G36180 38 / 0.001 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026860 [exp] 325 / 3e-115 AT4G13440 112 / 7e-32 Calcium-binding EF-hand family protein (.1) Potri.019G026780 [exp] 293 / 1e-102 AT4G13440 112 / 1e-31 Calcium-binding EF-hand family protein (.1) Potri.019G029000 [exp] 271 / 8e-94 AT4G13440 101 / 2e-27 Calcium-binding EF-hand family protein (.1) Potri.019G027440 [exp] 246 / 3e-82 AT4G13440 112 / 2e-30 Calcium-binding EF-hand family protein (.1) Potri.019G028800 [exp] 224 / 4e-75 AT4G13440 106 / 3e-29 Calcium-binding EF-hand family protein (.1) Potri.019G026900 [exp] 223 / 2e-74 AT4G13440 105 / 1e-28 Calcium-binding EF-hand family protein (.1) Potri.019G027100 [exp] 223 / 2e-74 AT4G13440 105 / 1e-28 Calcium-binding EF-hand family protein (.1) Potri.019G026740 [exp] 222 / 3e-74 AT4G13440 127 / 2e-37 Calcium-binding EF-hand family protein (.1) Potri.019G026820 [exp] 219 / 4e-73 AT4G13440 122 / 7e-36 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009127 [exp] 41 / 0.0003 AT1G66400 147 / 2e-44 calmodulin like 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.019G027200.2 pacid=42773727 polypeptide=Potri.019G027200.2.p locus=Potri.019G027200 ID=Potri.019G027200.2.v4.1 annot-version=v4.1 ATGGAGAGGATTCGCCGGGTTGCTGTAGCTTATTATGAAAATCTGCCCGAGGAGAAGAAGCGATATGCCAGATTTATTTTCGATGAAATGGACGAAAACA GAGACGGGCAAATTGACCTAGATGAATACGTGGAGTATCTCAAGAAACATAACAACACAATTTTTACTGATCCAAGCATGTTTAGAGCGCTGGACAAGGA CGGCGATGGAAGCTTGGATTTTGAGGAATCAATCACCTTGTACTACATCTTGCAGAGTGGAAGAGCTCTATTTTGCGACTGTTGTCATACGTTCTTGGCA GACGTATACTTCAGCTGCTTTCAATGTTTCTGTCTTCATGAGTCAGCTAGCACCTATGATCTTTGTTGTGATTGTTATGGTGGAAAAAAGTTCAATCACC ACGATGATGCCATTTTCTGGGATAACTGTACTTTACTAAGTAAAAGCAGGAGCTTGGCACTAGGAGCTCCCATAGAGAATCGAAGAAATGTGCTTGAAAA AATTGGAACGATAGCGGACTTTACAGGCATGGTTGTTAGTGGTGCTGTTTTTGCGTCATCCTTTGGCTGCAGCATTATGTGA
AA sequence Show only first row Show all	>Potri.019G027200.2 pacid=42773727 polypeptide=Potri.019G027200.2.p locus=Potri.019G027200 ID=Potri.019G027200.2.v4.1 annot-version=v4.1 MERIRRVAVAYYENLPEEKKRYARFIFDEMDENRDGQIDLDEYVEYLKKHNNTIFTDPSMFRALDKDGDGSLDFEESITLYYILQSGRALFCDCCHTFLA DVYFSCFQCFCLHESASTYDLCCDCYGGKKFNHHDDAIFWDNCTLLSKSRSLALGAPIENRRNVLEKIGTIADFTGMVVSGAVFASSFGCSIM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13440			Calcium-binding EF-hand family...		Potri.019G027200 [exp]	0	1
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.018G120000 [exp]	2.00	0.8887
					Potri.014G065500 [exp]	2.82	0.8530
					Potri.012G116250 [exp]	9.27	0.7638
					Potri.015G084300 [exp]	9.89	0.8319
AT4G35160			O-methyltransferase family pro...		Potri.013G121400 [exp]	10.77	0.7820	Pt-OOMT2.15
AT5G57880		MPS1, ATPRD2	ARABIDOPSIS THALIANA PUTATIVE ...		Potri.006G182201 [exp]	12.88	0.7400
AT5G49560			Putative methyltransferase fam...		Potri.007G025600 [exp]	12.96	0.8110
					Potri.004G076300 [exp]	14.00	0.8640
					Potri.017G019932 [exp]	21.90	0.8245
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.008G079800 [exp]	22.04	0.8709	Pt-AS2.2

Compare expression of checked genes

Potri.019G027200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.