Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00180 518 / 0 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) AT5G60040 100 / 3e-23 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 95 / 2e-21 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT3G57660 77 / 3e-15 NRPA1 nuclear RNA polymerase A1 (.1) AT1G63020 66 / 1e-11 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT2G40030 60 / 1e-09 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G140850 [exp] 571 / 0 ATCG00180 1181 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.001G341900 [exp] 100 / 3e-23 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 95 / 2e-21 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.006G055300 [exp] 87 / 8e-19 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.001G111300 [exp] 58 / 4e-09 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.003G196900 [exp] 57 / 6e-09 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 55 / 4e-08 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009499 [exp] 136 / 6e-40 ATCG00180 191 / 2e-58 DNA-directed RNA polymerase family protein (.1) Lus10013536 [exp] 99 / 8e-23 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10015971 [exp] 99 / 9e-23 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10041856 [exp] 97 / 4e-22 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10028403 [exp] 91 / 5e-20 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10040493 [exp] 86 / 2e-18 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 86 / 3e-18 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10002748 [exp] 60 / 1e-09 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10002955 [exp] 60 / 1e-09 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10000051 [exp] 55 / 4e-09 AT5G60040 224 / 5e-69 nuclear RNA polymerase C1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00623 [poplar] [flax] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF04983 [poplar] [flax] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [poplar] [flax] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1
Representative CDS sequence Show only first row Show all	>Potri.019G028000.1 pacid=42773412 polypeptide=Potri.019G028000.1.p locus=Potri.019G028000 ID=Potri.019G028000.1.v4.1 annot-version=v4.1 ATGAGTTCAGATATTAATGAACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTACAGATCTATTAACAACAAGCAGATCTACGCCAGGGGAATTAG TAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGCGGAAAACCAATGAGAGACGGTCATAATAAGGTTTACAA GTTGTTTTCAGATGTAATTGAAGGCAAAGAGGGAAGGTTTCGTGAGACTATGCTTGGCAAACGGGTTGATTATTCGGGGCGTTCTGTCATTTTCGTAGGA CCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTCTAATTAGGCAACATCTTGCTT CAAACATAGGAGTTGCTAAGAGTAAAATTCGAGAAAAAGAGCCAATTGTATGGGGAATACTTCAGGAGGTTATGCGGGGACATCCTATATTGCTGAATAG AGCGCCTACTCTGCATAGATTAGGCATACAGGCATTCCAACCCATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTCGTAAGGGATTCAAT GCAGATTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCGTTGGAGGCTCAAGCGGAGGCTCGTTTACTTATGTTTTCTCATATGAATCTCTTGT CTCCAGCTATCGGAGATCCCATTTCCGTACCAACTCAAGATATGCTTATGGGGCTCTATGTATTAACAAGCGGGAATCGTCGAGGTATTTGCGCAAATAG GTATAATCCGTTTAATTGCAGAAATTTTCAAAATGAAAAAATTGACGCTAATGCTAATAAGGATAAGTATATAAAAGAACCCTTTTTTGTAATTCATATG ATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAG
AA sequence Show only first row Show all	>Potri.019G028000.1 pacid=42773412 polypeptide=Potri.019G028000.1.p locus=Potri.019G028000 ID=Potri.019G028000.1.v4.1 annot-version=v4.1 MSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGKPMRDGHNKVYKLFSDVIEGKEGRFRETMLGKRVDYSGRSVIFVG PSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWGILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFN ADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPFNCRNFQNEKIDANANKDKYIKEPFFVIHM MQLELIARKESI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G028000 [exp]	0	1
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.003G067266 [exp]	4.24	0.9792
ATCG00170		ATCG00170.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G028101 [exp]	6.63	0.9775
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.019G027860 [exp]	7.34	0.9754
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Potri.013G143400 [exp]	9.79	0.9524
					Potri.005G220800 [exp]	10.77	0.8529
					Potri.007G062061 [exp]	10.95	0.9481
ATMG00580		ATMG00580.1, NA...	NADH dehydrogenase subunit 4 (...		Potri.007G061861 [exp]	11.61	0.9385
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Potri.013G140850 [exp]	11.83	0.9695
ATCG01250		ATCG01250.1, ND...	NADH-Ubiquinone/plastoquinone ...		Potri.011G075051 [exp]	12.36	0.9508
					Potri.011G074501 [exp]	12.36	0.9640

Compare expression of checked genes

Potri.019G028000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.