Plant FIBer expression Database

Potri.019G028400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG01280 930 / 0 ATCG01280.1, YCF2.2 Chloroplast Ycf2;ATPase, AAA type, core (.1)
ATCG00860 930 / 0 ATCG00860.1, YCF2.1 Chloroplast Ycf2;ATPase, AAA type, core (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G143400
[exp]
1026 / 0 ATCG01280 3894 / 0.0 Chloroplast Ycf2;ATPase, AAA type, core (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002548
[exp]
766 / 0 ATCG01280 829 / 0.0 Chloroplast Ycf2;ATPase, AAA type, core (.1)
Lus10007142
[exp]
98 / 1e-23 ATCG01280 95 / 2e-23 Chloroplast Ycf2;ATPase, AAA type, core (.1)
PFAM info
Representative CDS sequence
>Potri.019G028400.1 pacid=42774047 polypeptide=Potri.019G028400.1.p locus=Potri.019G028400 ID=Potri.019G028400.1.v4.1 annot-version=v4.1
ATGTCTCCTTGCATAATATGGATTCCAAACATTCACGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTAGTGAACTATCTCTCCAGGG
ATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATAC
ATGCATTAAGATACGAAGGCTTCTTATTCCACAACAACGAAAGCACGTTTTCACTCTTTCATATAGTAGGGGATTTCACTTGGAAAAGAAAATGTTCCAT
ACTAAGAGATTCGGGTCCGTAACCATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACACAGAAGAAATCAA
TTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCA
GATAGGAAGGGCTGTTGAACAAAATGTATTTCTAAGTAATTGCCCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGATTCT
TATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTATGCCGGATCGATTGCTCAAGACC
TTTGGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTATTATGGACTTGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGG
CGCTCTGGTGGGATCCTCACGGACAGAAAAAGATTGCAGTCAGTTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCAAGGAGTCCCTTAGAT
ATGATGCAAAATGGATCTTGTTCTATCCTTGATCAAAGATTTCTCTATGAAAAATATGAATCGGAGTTTGAAGAAGGGGAAGTAGAAGGAATCCTCGACC
CGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGAGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATTC
ATTGGGATTTCCCTATTGGGCCAGGTCATTTCGGGGTAAGCGGATCATTTATGATGAAGAGGATGAGCTTCAAGAGAATGATTCGGAGTTGTTGCAGAGT
GGAACCATGCAGTACCAGATACGAGATAGATCTTCCAAAGAACAAGGTGTTTTTCGAATAAGCCAATTCATTTGGGACCCTGCAAATCCACTCTTTTTCC
TATTCAAAGACCAGCCCCTTTATGAAGAGATGTCAAAGGGGCTTCTTACTTCCCAAACAAATCCTCCTACATTTATATATAAACGCTGGTTTATCAAGAA
TACATGGCTTAGAACCAAGAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCTATCCGAGAGTTATCAGTATTTATCAAATCTATTCCTAACTAAC
GGAAGGCTATTGGATCAAATGACAAAGGCATTGTTGAGAAAAATATGGCTTTTCCCGGATGAAATGAAAATTGGATTCATGTAA
AA sequence
>Potri.019G028400.1 pacid=42774047 polypeptide=Potri.019G028400.1.p locus=Potri.019G028400 ID=Potri.019G028400.1.v4.1 annot-version=v4.1
MSPCIIWIPNIHDLDVNESNYLSLGLLVNYLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHVFTLSYSRGFHLEKKMFH
TKRFGSVTMGSNVRDLVALTNEALSISITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVEQNVFLSNCPIDPISIYMKKKSCNEGDS
YLYKWYFELGTSMKKLTILLYLLSCYAGSIAQDLWSLPGPDEKNGITYYGLVENDSDLVHGLLEVEGALVGSSRTEKDCSQFDNDRVTLLLRPEPRSPLD
MMQNGSCSILDQRFLYEKYESEFEEGEVEGILDPQQIEEDLFNHIVWAPRIWSPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDEEDELQENDSELLQS
GTMQYQIRDRSSKEQGVFRISQFIWDPANPLFFLFKDQPLYEEMSKGLLTSQTNPPTFIYKRWFIKNTWLRTKSSLSNGFFRSNTLSESYQYLSNLFLTN
GRLLDQMTKALLRKIWLFPDEMKIGFM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Potri.019G028400
[exp]
0 1
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Potri.005G154512
[exp]
1.73 0.9568
ATCG01250 ATCG01250.1, ND... NADH-Ubiquinone/plastoquinone ... Potri.008G207100
[exp]
2.44 0.9385
Potri.007G061901
[exp]
2.82 0.9520
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Potri.013G143400
[exp]
6.32 0.9409
ATMG00730 ATMG00730.1, CO... cytochrome c oxidase subunit 3... Potri.007G062402
[exp]
7.00 0.9344
Potri.007G061560
[exp]
7.34 0.8917
ATCG00510 ATCG00510.1, PS... photsystem I subunit I (.1) Potri.016G094033
[exp]
13.85 0.9184
Potri.007G062162
[exp]
15.29 0.9040
Potri.007G061741
[exp]
18.22 0.8311
ATCG01270 ATCG01270.1, OR... Protein precursor Ycf15, putat... Potri.019G028450
[exp]
19.23 0.7505

Potri.019G028400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.