Plant FIBer expression Database

Potri.019G028450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG01270 48 / 3e-09 ATCG01270.1, ORF77.2 Protein precursor Ycf15, putative, chloroplast (.1)
ATCG00870 48 / 3e-09 ATCG00870.1, ORF77.1 Protein precursor Ycf15, putative, chloroplast (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10705 Ycf15 Chloroplast protein precursor Ycf15 putative
Representative CDS sequence
>Potri.019G028450.1 pacid=42773309 polypeptide=Potri.019G028450.1.p locus=Potri.019G028450 ID=Potri.019G028450.1.v4.1 annot-version=v4.1
ATGTTACTGCTGAAACATGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGGATGCAAAGATATCCACGGGGCGGTTCGTCCTATTCAGATATTCA
CGACCAAGAAGTACTGGATTCTCTTTCGGATAGGCTCTGAAAGGAGAAAGAGAAGGAAGGCTGGAATGCCAACAAACGCCTATTATTGA
AA sequence
>Potri.019G028450.1 pacid=42773309 polypeptide=Potri.019G028450.1.p locus=Potri.019G028450 ID=Potri.019G028450.1.v4.1 annot-version=v4.1
MLLLKHGRIEILDQNTMYGCKDIHGAVRPIQIFTTKKYWILFRIGSERRKRRKAGMPTNAYY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG01270 ATCG01270.1, OR... Protein precursor Ycf15, putat... Potri.019G028450
[exp]
0 1
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Potri.019G028400
[exp]
19.23 0.7505
ATCG01280 ATCG01280.1, YC... Chloroplast Ycf2;ATPase, AAA t... Potri.013G143400
[exp]
33.76 0.7160
ATCG01250 ATCG01250.1, ND... NADH-Ubiquinone/plastoquinone ... Potri.008G207100
[exp]
37.06 0.7149
Potri.007G061741
[exp]
40.37 0.7033
Potri.011G074150
[exp]
48.62 0.6998
Potri.008G224201
[exp]
52.10 0.6936
Potri.014G186020
[exp]
53.81 0.6930
Potri.008G224264
[exp]
57.07 0.6927
ATMG00730 ATMG00730.1, CO... cytochrome c oxidase subunit 3... Potri.007G062402
[exp]
58.02 0.6946
Potri.008G225401
[exp]
58.64 0.6926

Potri.019G028450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.