Plant FIBer expression Database

Potri.019G029400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04160 397 / 1e-127 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021982
[exp]
519 / 4e-175 AT3G04160 378 / 2e-121 unknown protein
Lus10021983
[exp]
454 / 2e-149 AT3G04160 313 / 4e-96 unknown protein
Lus10042519
[exp]
452 / 1e-148 AT3G04160 306 / 1e-93 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF05253 zf-U11-48K U11-48K-like CHHC zinc finger
Representative CDS sequence
>Potri.019G029400.8 pacid=42773574 polypeptide=Potri.019G029400.8.p locus=Potri.019G029400 ID=Potri.019G029400.8.v4.1 annot-version=v4.1
ATGAACCCTTATACTCCACACCCTAATCACCTTCCCTTCCCATATCCCTCCCAAAACTCTAATCCTAACCCTAACTTCCTACTCCACCCCTTCCTCCCCT
CACAACCGCCATCAAAACCACCTCAAGTTCCTCCACCTACCACCACCACAACAACCACCCCTATTCTTGATCTTTCCACCACGCTCTCCACTCTCACCAA
CCTCCTCTCTCTCACACACCAAACCCTCACTTCCCTCTCTCCACAAATTACCCTTTCAAAACCCCAAAATGCCAACTTTATCCCCTGCCCTTTCAATCGT
CACCACCTTATGCCACCAGAATCCCTCTTCCTCCACTCTCTTAACTGCCCAGTTCCTCTCTTTCAAAACCCATCTTCCCCTTTTGATTATCTTCACTACC
CCAATACACTTAACCCTCAAGACCCACATAAAGATTCAAACTTTAGTCAATCAATACAAGACCCTAATGAAACTGAACTTTGTTTCTCGTTAGATAGCTA
TTACAATCAGTTTAGTTCACATTTCTCTTACAATGACTGCCCTGGTGCTGTTAACTTGAATGATTTAGATAGCTCAAAAAGAATTTTTACATTACCTGGT
GTTCTGTTAATTGAATGTGTGAATTTTGGGGTTAGTGGGGAGAGCGAGCGAGATGGTTTTGATAAAAATGGGTTTAGAGTTTTGCCATCTGAGTTGTGGG
CAATAAGGAGGGAGATAGAGGGTTGGATTGATTATCCGAGTGTGTATTCGGATAGTGTGTTTTGCTCGATTTTGAGGTTGGATTTGATTAAAGGGAGTGA
TTTGAGGAGTTGGATTATTGCTAATTCTCCACGATATGGTGTGGTGATTGATGTTTATATGAGGGATCATATATGTGTTCTTTTTAGGCTTTGTTTGAAG
GCTATTAGAAAGGAAGGTTTGAGCTCTGTGAGTTGTGAGATGAATGTGAAATCTTTGAAGTGTCCAATTTTGGTTCAAGTTTTGACGTGGATTGCATCTC
AGCTTTCTGTTTTGTATGGTGAAGTGAATGCAAAGTGTTTTGCCATTCATGTTTTGAAGCAGTGTCTATTAGACGCTGCTAATGAGGTGTTGTTTCTGTT
GGACCCTTGTTTGAAAGAAAGTCTGAGGGATTTAGATGCTTATGAGAGTGAAATAAAGGATAGCAAACTTGAAGAGCCTCGAAAAGGAAGTAGAGAGTGT
AAAATAATAAAAGCAGTGGATGAAGGTGATGATGGAGTAATTTTTGTGTCCCAAGTGGCAGCTGCAGTCGCTGCATTGCATGAAAGGTCTATACTAGAAG
CAAAAATCAAGCTATTACGGGTTCCTCAACAACTACCAAGATATCAGCGGATGGCTGAGCATTCTTTTGCCTCAAAAAGAGCTGATGATGAGAGAAGTAA
ACGTCCTCAATACAAAGCTATTATTGAGCATGATGGCCTTCCTCGAAAGCAATTATCTAACCAGGAATCAAACAAATCAAAGACAAGAGAGGAGTTATTG
GCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGTTGAAACGAACAACTTTACAGGTGATGAGGGATATAATTGACGGATACA
TGGAGGAAATCAAGCTAGCTGGAGGAATAGGCCGCTTTGAGAAGGGAACTGAAGAGGAAGAGATGTCTCCTAATCCTCCTTCTGCCCCTGATGTTACTGT
GAATGAACTAAGAAAAGTCAATAGCCATTCTTCTGAAGCAACAAGAACTACTTCGAACCACTACCAGAAGGAATCATACCCCGCCCACAATTCTAGATCT
AAAACCTCGAAGGATGTGTTGCCTCAAGATTATGAGCAACAAGGACGAAGCAATCACGGTCACCATGAAAAGCTGGAATATCGGAGAAGTGCCAACCAAG
ACAGACATGGAAGAGAGTACAGCAGAAGTCCAGAAAGACACAGAAGTCATGCCCGATCACATGAGCGGAGTGGTCACCAAAGAGGACGAGATGAAACTAA
ATTGACTAGATCCAAGGATCATGAGAAACGGTCTTCTAGCAAGTCCTATCATGATTACAAGTCGTTGAATTCTGGACTAGAATCTGCAGATGGTATGCAA
AGGGATGATCGGAAGTTAGATGTAAGAGATGGGCATCTAAGAAATGCATATGGCAATCATGGTTCTAATTCTGTGGCACGAAATGCATTTGAGGATAGAT
ATGATCCTACAGGATCTTATGACATGCATGAGGATGATGTTTACACTAGCATTACATATGCCAGGGAAGATGTTCATGATTGA
AA sequence
>Potri.019G029400.8 pacid=42773574 polypeptide=Potri.019G029400.8.p locus=Potri.019G029400 ID=Potri.019G029400.8.v4.1 annot-version=v4.1
MNPYTPHPNHLPFPYPSQNSNPNPNFLLHPFLPSQPPSKPPQVPPPTTTTTTTPILDLSTTLSTLTNLLSLTHQTLTSLSPQITLSKPQNANFIPCPFNR
HHLMPPESLFLHSLNCPVPLFQNPSSPFDYLHYPNTLNPQDPHKDSNFSQSIQDPNETELCFSLDSYYNQFSSHFSYNDCPGAVNLNDLDSSKRIFTLPG
VLLIECVNFGVSGESERDGFDKNGFRVLPSELWAIRREIEGWIDYPSVYSDSVFCSILRLDLIKGSDLRSWIIANSPRYGVVIDVYMRDHICVLFRLCLK
AIRKEGLSSVSCEMNVKSLKCPILVQVLTWIASQLSVLYGEVNAKCFAIHVLKQCLLDAANEVLFLLDPCLKESLRDLDAYESEIKDSKLEEPRKGSREC
KIIKAVDEGDDGVIFVSQVAAAVAALHERSILEAKIKLLRVPQQLPRYQRMAEHSFASKRADDERSKRPQYKAIIEHDGLPRKQLSNQESNKSKTREELL
AEERDYKRRRMSYRGKKLKRTTLQVMRDIIDGYMEEIKLAGGIGRFEKGTEEEEMSPNPPSAPDVTVNELRKVNSHSSEATRTTSNHYQKESYPAHNSRS
KTSKDVLPQDYEQQGRSNHGHHEKLEYRRSANQDRHGREYSRSPERHRSHARSHERSGHQRGRDETKLTRSKDHEKRSSSKSYHDYKSLNSGLESADGMQ
RDDRKLDVRDGHLRNAYGNHGSNSVARNAFEDRYDPTGSYDMHEDDVYTSITYAREDVHD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G04160 unknown protein Potri.019G029400
[exp]
0 1
AT1G70620 cyclin-related (.1.2.3) Potri.010G046000
[exp]
1.41 0.8850
AT3G12810 CHR13, SRCAP, P... PHOTOPERIOD-INDEPENDENT EARLY ... Potri.001G207700
[exp]
3.16 0.8747
AT3G08670 unknown protein Potri.006G110700
[exp]
3.87 0.8236
AT1G24706 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.... Potri.019G054600
[exp]
3.87 0.8641
AT4G32850 PAP(IV), PAP(IV... poly\(A\) polymerase IV, poly\... Potri.006G235400
[exp]
4.24 0.8471
AT4G00060 MEE44 maternal effect embryo arrest ... Potri.014G066000
[exp]
4.24 0.8560
AT2G28290 CHR3, SYD SPLAYED, CHROMATIN REMODELING ... Potri.010G019150
[exp]
4.47 0.8610
AT5G12430 TPR16 tetratricopeptide repeat 16, H... Potri.009G050200
[exp]
4.47 0.8453
AT5G24740 Protein of unknown function (D... Potri.001G455600
[exp]
5.00 0.8578
Potri.009G112922
[exp]
5.29 0.8528

Potri.019G029400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.