Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18310 94 / 2e-24 unknown protein AT5G48500 60 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052600 [exp] 261 / 2e-90 AT5G18310 97 / 8e-26 unknown protein Potri.015G040500 [exp] 117 / 8e-35 AT5G18310 59 / 2e-12 unknown protein Potri.002G250800 [exp] 92 / 3e-24 AT5G48500 100 / 2e-27 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042520 [exp] 125 / 9e-37 AT5G18310 81 / 1e-19 unknown protein Lus10021984 [exp] 125 / 1e-36 AT5G18310 76 / 2e-17 unknown protein Lus10020403 [exp] 76 / 2e-17 AT5G48500 127 / 7e-38 unknown protein Lus10009584 [exp] 75 / 3e-17 AT5G48500 126 / 3e-37 unknown protein Lus10006540 [exp] 47 / 6e-07 ND 37 / 0.002
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G029600.2 pacid=42773922 polypeptide=Potri.019G029600.2.p locus=Potri.019G029600 ID=Potri.019G029600.2.v4.1 annot-version=v4.1 ATGGATGAGTGGAGGAGAAGTGGACAAATACCAGCATTTGGAAACTGGGACCAAGCAAACGAGCTGCCAATCACGCAGTATTTTGAATCTGCAAGACAGG CAGGATTGATCCGATTCAGTACCACTCATAATTCCTCTGGAGAATGTGGTCATCAGGACATGCGTGGTGATCTATATGCTTCTGATATCAACAAACCTTC TCGTAATCTTCCTCCCCCTGTAAAGACAAGAATGAGAGAAAAGCGAGGCACGCATGCTAAGGAGCAGAGAAAGCAGGGAAAAGTCTGTGACGTGACTGAA CCGGCAAGGAAACAACAGCAGCAGCCACAGCCCACAGTGTACCATAAGAATAAGATATCACAATATTCTCATAAAATGGACACTGTAATTGTTGCCAAAG CTCCTGTTAAACCTCCCAAGGCCATCGATGAAGATCTCTACAAAATCTCACCTGAGCTCCTCCGCTCTTCCAAGCGGAAGAAAAGACCAGGCTTGTTTTC ATGCCTTGTACCCGCTTGTGTTTCATAG
AA sequence Show only first row Show all	>Potri.019G029600.2 pacid=42773922 polypeptide=Potri.019G029600.2.p locus=Potri.019G029600 ID=Potri.019G029600.2.v4.1 annot-version=v4.1 MDEWRRSGQIPAFGNWDQANELPITQYFESARQAGLIRFSTTHNSSGECGHQDMRGDLYASDINKPSRNLPPPVKTRMREKRGTHAKEQRKQGKVCDVTE PARKQQQQPQPTVYHKNKISQYSHKMDTVIVAKAPVKPPKAIDEDLYKISPELLRSSKRKKRPGLFSCLVPACVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18310			unknown protein		Potri.019G029600 [exp]	0	1
AT2G22620			Rhamnogalacturonate lyase fami...		Potri.006G218500 [exp]	4.24	0.6866
AT1G34340			alpha/beta-Hydrolases superfam...		Potri.013G115000 [exp]	5.91	0.6503
AT1G55210			Disease resistance-responsive ...		Potri.003G216300 [exp]	7.74	0.6538
					Potri.017G084700 [exp]	8.48	0.6486
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.001G189700 [exp]	25.61	0.6278
AT1G58120			unknown protein		Potri.017G047700 [exp]	43.41	0.5962
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.016G043400 [exp]	57.57	0.5893
AT2G34590			Transketolase family protein (...		Potri.017G076500 [exp]	58.30	0.6040	PDH.1
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.009G060400 [exp]	67.61	0.5458
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	70.55	0.6138

Compare expression of checked genes

Potri.019G029600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.