Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38430 313 / 5e-104 unknown protein AT3G54310 267 / 2e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G029800 [exp] 688 / 0 AT2G38430 305 / 8e-101 unknown protein Potri.019G030200 [exp] 669 / 0 AT2G38430 275 / 6e-89 unknown protein Potri.019G029900 [exp] 663 / 0 AT2G38430 311 / 3e-103 unknown protein Potri.019G030050 [exp] 167 / 2e-51 AT2G38430 81 / 3e-19 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030356 [exp] 360 / 2e-122 AT2G38430 225 / 6e-70 unknown protein Lus10003276 [exp] 260 / 1e-83 AT2G38430 158 / 1e-44 unknown protein Lus10004782 [exp] 55 / 1e-08 AT3G54310 47 / 1e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G030300.2 pacid=42773944 polypeptide=Potri.019G030300.2.p locus=Potri.019G030300 ID=Potri.019G030300.2.v4.1 annot-version=v4.1 ATGGCTTACATTCCTCCACACAAGCGGTATTCCAAGGATGTGAGAAGGGCATCCCCAATTCCAGAGACACTGCATCGTCAGTTTAAAAGAAATATGAATT TGAGAGCATCCACTTCTCATTTAGATAAGAGTGGAAAGATCGTTTACGCAGACCGTTGCATATCTAAATGGTTCGCTGTTGGTTTGGACGATGATGACAA CTTTCCTCCTCACATCCATCTCGAGCCGATTTCCTTGGAATATGTTGAGCGTAAAAGTGGAGAAAAGCCTCTGGTCTTGGTGAATAGCGTTGTAACTGAA GAGGATAGCAAATTGGAAAGGAATTGCTCCAGAAGTCCATGGGAGATTATAGCTGAAGAAGTACAGCAAGAACTACTCTCTTCTTTCGAAATCTTGAGGA ATGAAATGGATGATCAGGGTTCTGAAAGAGTAAAGCCAACATTGGTTGCTCGATTGGGAAAATTTCTTTTTCATGGGAGCCGTTCAATGGCACTAGAAAG TGTCGATAAAATTCAGGTTGAAGAAGCCATTTTGAGACAACTCAGAAGATCATTGTACACAAATATTCCTTCTTCATACATGGAGAATATTATAGATGGA GTGGTCCCAGTGATTGGAGTTGATTTTGAAGAGGAGAAAGATGTTTATCATGTAAAGTTGTCTGATAATACACGGCCAGATGCCACTATTTCATGCAAAT GCAGTGTGCTGGAAAATAAAAAACTTCTCCTCTACAAGGTTGAACTAAACCCAGTGCGCCAGATGGTCATAGATGTATCATGTCTTGATAAGAATCTGGA CCTCAGGCTAATGCTTAGCACCAAGAGGATCTTAACAACTCTAACTGATGACGAGATGAATAGCATTAGAGATCTGATCAATTCTGCAGTTCTAGATTCA GATATGAAGGGTGGATTAAGATGGCCCCTAGGGAAGGCGTCTTCTGGTGGTAGATATAGCGTCACTGGGGCTTGGCACACAGTAACCAAAGCCTATAAAA GTTCATCGTTTAGGCTTAAAGTAAGAGATGCCGATCGATTTGATTTTAGGAGTGGAGCTGGGGAAGCTGCAAGAGAGATTTATCTGAAGTTGAAAAGAAT TGTTTCAGAAATACAGGAACCGGGAGCTGAAAGTGATTCAATCTCCAAGATGCTCGAGGACAGCTTAAGACTGATATGGGACAAGTTCTTATGCTGCGAA CGGTTTCTAACATGA
AA sequence Show only first row Show all	>Potri.019G030300.2 pacid=42773944 polypeptide=Potri.019G030300.2.p locus=Potri.019G030300 ID=Potri.019G030300.2.v4.1 annot-version=v4.1 MAYIPPHKRYSKDVRRASPIPETLHRQFKRNMNLRASTSHLDKSGKIVYADRCISKWFAVGLDDDDNFPPHIHLEPISLEYVERKSGEKPLVLVNSVVTE EDSKLERNCSRSPWEIIAEEVQQELLSSFEILRNEMDDQGSERVKPTLVARLGKFLFHGSRSMALESVDKIQVEEAILRQLRRSLYTNIPSSYMENIIDG VVPVIGVDFEEEKDVYHVKLSDNTRPDATISCKCSVLENKKLLLYKVELNPVRQMVIDVSCLDKNLDLRLMLSTKRILTTLTDDEMNSIRDLINSAVLDS DMKGGLRWPLGKASSGGRYSVTGAWHTVTKAYKSSSFRLKVRDADRFDFRSGAGEAAREIYLKLKRIVSEIQEPGAESDSISKMLEDSLRLIWDKFLCCE RFLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38430			unknown protein		Potri.019G030300 [exp]	0	1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113300 [exp]	1.73	0.7540
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G112900 [exp]	2.82	0.7290
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113100 [exp]	15.77	0.7052
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182300 [exp]	20.00	0.6660
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Potri.006G204200 [exp]	20.39	0.6190
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G154200 [exp]	22.36	0.6647	NAC087
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064800 [exp]	24.49	0.6632
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017450 [exp]	25.49	0.6348
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Potri.017G031800 [exp]	26.45	0.6430
AT4G10270			Wound-responsive family protei...		Potri.013G148000 [exp]	31.49	0.6429

Compare expression of checked genes

Potri.019G030300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.