Plant FIBer expression Database

Potri.019G030500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39060 272 / 5e-92 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1)
AT5G13170 242 / 8e-80 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1)
AT3G48740 242 / 8e-80 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1)
AT5G23660 240 / 4e-79 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1)
AT5G50800 230 / 4e-75 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1)
AT5G50790 225 / 4e-73 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1)
AT4G25010 219 / 8e-71 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1)
AT1G21460 159 / 5e-48 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1)
AT3G16690 157 / 2e-47 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1)
AT4G15920 155 / 2e-46 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G101700
[exp]
249 / 1e-82 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1)
Potri.012G103200
[exp]
246 / 1e-81 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1)
Potri.015G101400
[exp]
245 / 2e-81 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1)
Potri.015G101500
[exp]
241 / 2e-79 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1)
Potri.015G101600
[exp]
239 / 1e-78 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1)
Potri.003G166800
[exp]
237 / 5e-78 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1)
Potri.001G060900
[exp]
223 / 1e-72 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1)
Potri.013G013800
[exp]
199 / 4e-63 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1)
Potri.013G013900
[exp]
194 / 1e-60 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008861
[exp]
276 / 8e-94 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1)
Lus10023249
[exp]
276 / 1e-93 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1)
Lus10024770
[exp]
262 / 1e-87 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1)
Lus10009782
[exp]
259 / 3e-86 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1)
Lus10005935
[exp]
236 / 4e-77 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1)
Lus10040901
[exp]
233 / 5e-76 AT5G13170 236 / 8e-77 senescence-associated gene 29 (.1)
Lus10000310
[exp]
219 / 6e-71 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1)
Lus10015754
[exp]
219 / 8e-71 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1)
Lus10032553
[exp]
218 / 3e-70 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1)
Lus10003143
[exp]
213 / 1e-68 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0141 MtN3-like PF03083 MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence
>Potri.019G030500.1 pacid=42773308 polypeptide=Potri.019G030500.1.p locus=Potri.019G030500 ID=Potri.019G030500.1.v4.1 annot-version=v4.1
ATGGGGTTCTTGTCAAACGATCAGCTGACTTTCTTATTTGGTCTCCTTGGAAATATTGTGGCAGCGGGGATGTTCTTGGCGCCAGTGCCCACTTTCTACA
CAATTTTTAAGAGGAAATCTTCTGAAGGTTTTCAATCAATACCATATTCAGTTGCCCTCATGAGTGCCTCATTGCTGTTATATTATGGTCTTCTCAAGAC
AAATGCTTATTTGCTTATTAGCATCAACAGCATTGGATGTGCTTTTGAGGTTACTTACCTGATAATCTACCTAATATATGCACCGAAACAGGAAAAGATG
CATACGATGAAGCTGTTACTCATTTTCAACATGGGGAGTTTTGGCGTGGTGTTGTTACTCACCATGTTACTAATGAAGGGCAAACCTCGACTTTCTGTCG
TTGGGTGGATTTGTGCCGTTTTCAGCGTTGCTGTATGTGCTGCTCCATTAAGCATCATGAGACGGGTAGTAAGAACTAAAAGTGTAGAATACTTGCCATT
CACATTGTCTGCTTCCATTACTCTCAATGCTGTAATGTGGTTCTTCTATGGGCTTCTGCAACACGATTACTACATTGCACTACCAAATGTGCTAGGGTTT
TTGCTTGGAATTGCTCAGATGATCTTGTACATGGTATACAAGAATTTGAAGAAGAATGTTGAAGAAAAATCAGAACAGCTTGCAGGGAATATGGAGGTGG
TGCAAATGACAAAGGAGACTGAGAGTTGTACCGTTGACGATCCACACATGGAAACTAAGATATGCATTTGTGATCTCTAA
AA sequence
>Potri.019G030500.1 pacid=42773308 polypeptide=Potri.019G030500.1.p locus=Potri.019G030500 ID=Potri.019G030500.1.v4.1 annot-version=v4.1
MGFLSNDQLTFLFGLLGNIVAAGMFLAPVPTFYTIFKRKSSEGFQSIPYSVALMSASLLLYYGLLKTNAYLLISINSIGCAFEVTYLIIYLIYAPKQEKM
HTMKLLLIFNMGSFGVVLLLTMLLMKGKPRLSVVGWICAVFSVAVCAAPLSIMRRVVRTKSVEYLPFTLSASITLNAVMWFFYGLLQHDYYIALPNVLGF
LLGIAQMILYMVYKNLKKNVEEKSEQLAGNMEVVQMTKETESCTVDDPHMETKICICDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G39060 SWEET9, AtSWEET... Nodulin MtN3 family protein (.... Potri.019G030500
[exp]
0 1

Potri.019G030500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.