Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) AT3G59110 194 / 9e-55 Protein kinase superfamily protein (.1) AT2G42960 192 / 2e-54 Protein kinase superfamily protein (.1) AT2G19230 197 / 9e-54 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G46350 196 / 1e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G09440 188 / 3e-53 Protein kinase superfamily protein (.1) AT1G51830 192 / 5e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 194 / 2e-52 Leucine-rich repeat protein kinase family protein (.1) AT1G56720 187 / 2e-52 Protein kinase superfamily protein (.1.2.3) AT5G28680 192 / 4e-52 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053001 [exp] 932 / 0 AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 207 / 4e-57 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G059000 [exp] 198 / 2e-56 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.008G145900 [exp] 194 / 2e-56 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G114400 [exp] 205 / 3e-56 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G095900 [exp] 194 / 4e-56 AT1G24030 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G087000 [exp] 200 / 7e-56 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.003G032100 [exp] 193 / 7e-56 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 195 / 2e-55 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006544 [exp] 711 / 0 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10003274 [exp] 704 / 0 AT1G70530 205 / 4e-59 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10030863 [exp] 218 / 8e-63 AT1G09440 163 / 2e-42 Protein kinase superfamily protein (.1) Lus10028549 [exp] 198 / 6e-58 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10038174 [exp] 204 / 1e-57 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018855 [exp] 196 / 3e-56 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10025926 [exp] 203 / 6e-56 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011490 [exp] 192 / 1e-55 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10012159 [exp] 202 / 2e-55 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 201 / 4e-55 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G030600.1 pacid=42773985 polypeptide=Potri.019G030600.1.p locus=Potri.019G030600 ID=Potri.019G030600.1.v4.1 annot-version=v4.1 ATGATTAGGAGAGGATTTCTTTCTTCAACTAAGCTTGCCTTCCTGCACACAACAATCTTCTTCTTTCATGTCTTGTCATCAGATGGTTTCCCTTCACCAA ATGGCACATCAGGTAACTGTGTCTTGGACTTCAAGGAATTCCCTTACGAACCAACCGGTGAGTGCATAGGCCACCAGGAGAAAATCAAGGACTGGGACAG CTTCAGCACAACATTATGCTGTCGTAATCTGCTCAACGATCTGACCAAACTCTTAGCCTCGCGTGCAATATCGAACACAGATGTTGACATCTTGCTTCCA AAAGATCAATGGATGGAATGTATCCATGGCTTTCCTGGACAAAACTCTGTGTCACCGGCTTCTTGTGGCTTTGATGACCTCTACAATGAGAGAAGTGCTT GCTCGAGATTTTCTTTGTCATCGATTACGGAACAGTGGTATTACAAAAAAGCATTAGCCTCGTGTACGAATTTTAGCTCTTCATACGATTATGGGTGTAG CAGCTGCATAGAGGCACTGTCCGATTTGAGGGATTATCAGTTACGAATATCAAATGTCAGCGCTAATGACAAGAAGGCAAAAATAGTATGTGGGGTGGCA GTTCTTATTTCTGTTGTGGCTGAAAATTTGAAGAATAGCGCTTGGATTGATGATTTCTACAGGTGTTTGCCAGCGTCAGATGCATTCAATGAAGGATACA TGCAAATCAAATATTCTCTGGTGAAAGTGGTATTTGCTATTTTTATAGCAATCATCACATTGTTGCTGGTCTTTCTTCTGATAAAATACGTGAGCAAGGG CAAGAAGAAGCGTCCTAAGCCCGTAATTCAATCTAAAGAGATCACCACATGGTCTGGCTTATATAGATTCTCCAAGGCTGAGATTGAGAATGCCATTAAC CACAGCAAGGTGAGGAAGAGCCTAGGGAGAGGAAGCGCTGGGGAAGTTTACAAAGGTGTTCTACCAAGTGGCCAAGCAGTAGCCATCAAGCACATTCATA AAAGCAACTCATGTGATTCTTTCCAGAGGGAAGTTGAAGGGCTTTCCAGGGTTAGGCATCCAAATCTTGTTTGTCTCTTTGGTTGCTGCATCGAAGGAGA CGACCGGTATCTTGTATATGAATATTGTGCAGCTGGGAATTTGTCTCAACATCTCCTAAGTAAACATACTGTACTGACATGGGAACGAAGAGTTAAGATC CTAAGAGACTGTGCTCTTGGATTGAGATACCTTCACCATTTTATAGATGGCTGCATTGTCCACAGAGACATCAAGCTCACCAACATCCTTCTGACTGAGA ATTTGGAGCCAAAACTCTCAGATTTTGGATTGGCAAAGATGCTCGGCATGGAAGAGAGCAAAGTTTTCACGGATGTTAGAGGAACGATGGGCTATATGGA CCCAGAATATATGAGCAATGCCAAACTAACATGTGCCAGTGACATCTATAGCTTTGGTATTGTTACTCTTCAACTATTGTCTGGGCAAAAAGTAATCGAG TTGGATCTTGATTCCAGAGATCAGCTCACCAGAAAGGCCAAGGATGCCAGTGCAGGAAAACGTCCGTTAACAGATTTTGAAGATCCAAGGCTCAACGGAA AGGTCAACAGCGTTGATTTTGAAGCCATTTTGCAAATTGCTGTCCTCTGTGTTGCAAAATCAAGCAAAGGTCGCCCTACTATTGATGATGTCTTTGAAGA GATAGAGAAGGCTTGGAAAAACACACTTGCTGAGATGAAAGCAAATCGAGAGATGGTCTCATCAATGTCAAGATCTTTGGAAGCGATACCCGTGTAA
AA sequence Show only first row Show all	>Potri.019G030600.1 pacid=42773985 polypeptide=Potri.019G030600.1.p locus=Potri.019G030600 ID=Potri.019G030600.1.v4.1 annot-version=v4.1 MIRRGFLSSTKLAFLHTTIFFFHVLSSDGFPSPNGTSGNCVLDFKEFPYEPTGECIGHQEKIKDWDSFSTTLCCRNLLNDLTKLLASRAISNTDVDILLP KDQWMECIHGFPGQNSVSPASCGFDDLYNERSACSRFSLSSITEQWYYKKALASCTNFSSSYDYGCSSCIEALSDLRDYQLRISNVSANDKKAKIVCGVA VLISVVAENLKNSAWIDDFYRCLPASDAFNEGYMQIKYSLVKVVFAIFIAIITLLLVFLLIKYVSKGKKKRPKPVIQSKEITTWSGLYRFSKAEIENAIN HSKVRKSLGRGSAGEVYKGVLPSGQAVAIKHIHKSNSCDSFQREVEGLSRVRHPNLVCLFGCCIEGDDRYLVYEYCAAGNLSQHLLSKHTVLTWERRVKI LRDCALGLRYLHHFIDGCIVHRDIKLTNILLTENLEPKLSDFGLAKMLGMEESKVFTDVRGTMGYMDPEYMSNAKLTCASDIYSFGIVTLQLLSGQKVIE LDLDSRDQLTRKAKDASAGKRPLTDFEDPRLNGKVNSVDFEAILQIAVLCVAKSSKGRPTIDDVFEEIEKAWKNTLAEMKANREMVSSMSRSLEAIPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24030			Protein kinase superfamily pro...		Potri.019G030600 [exp]	0	1
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.007G100500 [exp]	16.67	0.9465	Pt-NHX8.1
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105100 [exp]	20.59	0.9263
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G140800 [exp]	20.78	0.9443
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.004G147600 [exp]	22.02	0.9414
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Potri.012G098200 [exp]	23.95	0.8841
AT1G72890			Disease resistance protein (TI...		Potri.006G282400 [exp]	29.83	0.9026
AT4G31980			unknown protein		Potri.003G206101 [exp]	34.08	0.9203
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.017G133732 [exp]	37.30	0.9349
AT5G63520			unknown protein		Potri.012G100600 [exp]	40.24	0.9397
AT1G62600			Flavin-binding monooxygenase f...		Potri.013G019900 [exp]	45.35	0.9141

Compare expression of checked genes

Potri.019G030600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.